Evidence map›Paper›PMID 28815128›Full record

ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2017

A comparative study of different methods for automatic identification of clopidogrel-induced bleedings in electronic health records.

Hee-Jin Lee, Min Jiang, Yonghui Wu, Christian M Shaffer, John H Cleator, Eitan A Friedman, Joshua P Lewis, Dan M Roden, Josh Denny, Hua Xu

Open access · greenAbstract read
In one paragraph

Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Deep learning detects and visualizes bleeding events in electronic health records.Research and practice in thrombosis and haemostasis · 2021
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Hee-Jin LeeUniversity of Texas Health Science Center at Houston, Houston, TX.
Min JiangUniversity of Texas Health Science Center at Houston, Houston, TX.
Yonghui WuUniversity of Texas Health Science Center at Houston, Houston, TX.
Christian M ShafferDepartment of Pharmacology, Vanderbilt University School of Medicine, Nashville, TN.
John H CleatorDepartment of Pharmacology, Vanderbilt University School of Medicine, Nashville, TN.
Eitan A FriedmanDivision of Cardiovascular Medicine, Vanderbilt University, Nashville, TN.
Joshua P LewisDivision of Endocrinology, Diabetes and Nutrition, University of Maryland School of Medicine, Baltimore, MD.
Dan M RodenDepartment of Pharmacology, Vanderbilt University School of Medicine, Nashville, TN.
Josh DennyDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN.
Hua XuUniversity of Texas Health Science Center at Houston, Houston, TX.
Vanderbilt University · USThe University of Texas Health Science Center at Houston · USUniversity of Maryland, Baltimore · US

Funding

Natural language processing for clinical and translational researchR01GM102282 · NIGMS · MAYO CLINIC ROCHESTER · PI LIU, HONGFANG, PAKHOMOV, SERGUEI VS · 2013 to 2016
$2.5M
Informatics Tools for Pharmacogenomic Discovery using Practice-based DataR01GM103859 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENNY, JOSHUA C., PATHAK, JYOTISHMAN · 2014 to 2017
$2.4M
NIGMS NIH HHS R01 GM102282NIGMS NIH HHS R01 GM103859
6 · The paper itself

Abstract

Electronic health records (EHRs) linked with biobanks have been recognized as valuable data sources for pharmacogenomic studies, which require identification of patients with certain adverse drug reactions (ADRs) from a large population. Since manual chart review is costly and time-consuming, automatic methods to accurately identify patients with ADRs have been called for. In this study, we developed and compared different informatics approaches to identify ADRs from EHRs, using clopidogrel-induced bleeding as our case study. Three different types of methods were investigated: 1) rule-based methods; 2) machine learning-based methods; and 3) scoring function-based methods. Our results show that both machine learning and scoring methods are effective and the scoring method can achieve a high precision with a reasonable recall. We also analyzed the contributions of different types of features and found that the temporality information between clopidogrel and bleeding events, as well as textual evidence from physicians' assertion of the adverse events are helpful. We believe that our findings are valuable in advancing EHR-based pharmacogenomic studies.

Identifiers

PMID28815128
PMCPMC5543340
OpenAlexW2786847803

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.