ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2017
Systematic Analysis of Free-Text Family History in Electronic Health Record.
Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Incomplete Family History and Meeting Algorithmic Criteria for Genetic Evaluation of Hereditary Cancer.JAMA network open · 2025Article
- Environmental scan of family chart linking for genetic cascade screening in a U.S. integrated health system.Frontiers in genetics · 2022Article
- Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition.JMIR medical informatics · 2021Article
- Extraction of Family History Information From Clinical Notes: Deep Learning and Heuristics Approach.JMIR medical informatics · 2020Article
- Extracting Family History of Patients From Clinical Narratives: Exploring an End-to-End Solution With Deep Learning Models.JMIR medical informatics · 2020Article
- Clinical concept extraction using transformers.Journal of the American Medical Informatics Association : JAMIA · 2020Article
- Family member information extraction via neural sequence labeling models with different tag schemes.BMC medical informatics and decision making · 2019Article
- Article
- A clinical text classification paradigm using weak supervision and deep representation.BMC medical informatics and decision making · 2019Article
- A comparison of word embeddings for the biomedical natural language processing.Journal of biomedical informatics · 2018Article
- Automatic Genetic Risk Assessment Calculation Using Breast Cancer Family History Data from the EHR compared to Self-Report.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2018Article
- Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2018Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Family history is an important component in modern clinical care especially in the era of precision medicine. Family history information in the Electronic Health Record (EHR) system is usually stored in structured format as well as in free-text format. In this study, we systematically analyzed a family history text corpus from 3 million clinical notes for the patients receiving their primary care at Mayo Clinic. Family members, medical problems, and their associations were analyzed and reported. Our findings showed a great agreement between positive/negated medical problems mentioned in the diagnosis report and the family history, as measured by observed agreement and random agreement. We also found that the family history of some medical problems existed up to 10~15 years prior to the diagnosis date of such problems. Finally two patient cases were studied to show the medical problems in the diagnosis and family history associated with the timeline.
Identifiers
28815117PMC5543380What OpenQuestion holds
Registered trials
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