Evidence map›Paper›PMID 28815113›Full record

ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2017

Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research.

Joel Saltz, Jonas Almeida, Yi Gao, Ashish Sharma, Erich Bremer, Tammy DiPrima, Mary Saltz, Jayashree Kalpathy-Cramer, Tahsin Kurc

Abstract read
In one paragraph

Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Review
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  3. Celebrating neuropathology's contributions to Alzheimer's Disease Research Centers.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
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  6. Review
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  9. Heterogeneity of Glycolytic Phenotype Determined byDiagnostics (Basel, Switzerland) · 2023
    Article
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  11. Review
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Joel SaltzBiomedical Informatics Department, Stony Brook University, Stony Brook, NY.
Jonas AlmeidaBiomedical Informatics Department, Stony Brook University, Stony Brook, NY.
Yi GaoBiomedical Informatics Department, Stony Brook University, Stony Brook, NY.
Ashish SharmaBiomedical Informatics Department, Emory University, Atlanta, GA.
Erich BremerBiomedical Informatics Department, Stony Brook University, Stony Brook, NY.
Tammy DiPrimaBiomedical Informatics Department, Stony Brook University, Stony Brook, NY.
Mary SaltzDepartment of Radiology, Stony Brook University, Stony Brook, NY.
Jayashree Kalpathy-CramerDepartment of Radiology, Massachusetts General Hospital, Boston, MA.
Tahsin KurcBiomedical Informatics Department, Stony Brook University, Stony Brook, NY.

Funding

Image Mining for Comparative Analysis of Expression Patterns in Tissue MicroarrayR01LM009239 · NLM · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI FORAN, DAVID J, SALTZ, JOEL H. · 2007 to 2016
$4.5M
Tools to Analyze Morphology and Spatially Mapped Molecular DataU24CA180924 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI SALTZ, JOEL H. · 2014 to 2019
$3.6M
Informatics Tools for Optimized Imaging Biomarkers for Cancer Research&DiscoveryU24CA180927 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI KALPATHY-CRAMER, JAYASHREE, ROSEN, BRUCE R · 2014 to 2018
$3.4M
Center for Grid-Enabled Medical Image AnalysisP20EB000591 · NIBIB · OHIO STATE UNIVERSITY · PI SALTZ, JOEL H · 2003 to 2005
$2.1M
Informatics for Integrative Brain Tumor Whole Slide AnalysisR01LM011119 · NLM · STATE UNIVERSITY NEW YORK STONY BROOK · PI FORAN, DAVID J, SALTZ, JOEL H. · 2011 to 2014
$1.8M
NCI NIH HHS U24 CA180924NCI NIH HHS U24 CA180927NIBIB NIH HHS P20 EB000591NLM NIH HHS R01 LM009239NLM NIH HHS R01 LM011119
6 · The paper itself

Abstract

Cancer is a complex multifactorial disease state and the ability to anticipate and steer treatment results will require information synthesis across multiple scales from the host to the molecular level. Radiomics and Pathomics, where image features are extracted from routine diagnostic Radiology and Pathology studies, are also evolving as valuable diagnostic and prognostic indicators in cancer. This information explosion provides new opportunities for integrated, multi-scale investigation of cancer, but also mandates a need to build systematic and integrated approaches to manage, query and mine combined Radiomics and Pathomics data. In this paper, we describe a suite of tools and web-based applications towards building a comprehensive framework to support the generation, management and interrogation of large volumes of Radiomics and Pathomics feature sets and the investigation of correlations between image features, molecular data, and clinical outcome.

Identifiers

PMID28815113
PMCPMC5543366

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.