Evidence map›Paper›PMID 28814775›Full record

ArticleScientific reports2017

Mutational profile of rare variants in inflammasome-related genes in Behçet disease: A Next Generation Sequencing approach.

Sergio Burillo-Sanz, Marco-Antonio Montes-Cano, José-Raúl García-Lozano, Lourdes Ortiz-Fernández, Norberto Ortego-Centeno, Francisco-José García-Hernández, Gerard Espinosa, Genaro Graña-Gil, Juan Sánchez-Bursón, María Rosa Juliá and 12 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Behçet's syndrome: recent advances to aid diagnosis.Clinical and experimental medicine · 2023
    Review
  4. Identification of anJournal of geriatric cardiology : JGC · 2023
    Article
  5. Review
  6. The Immunogenetics of Behcet's Disease.Advances in experimental medicine and biology · 2022
    Article
  7. Clinical Manifestations and Management of Pediatric Behçet's Disease.Clinical reviews in allergy & immunology · 2021
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 17 institutions in 1 country.

Sergio Burillo-SanzDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.ORCID 0000-0002-6895-7875
Marco-Antonio Montes-CanoDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
José-Raúl García-LozanoDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
Lourdes Ortiz-FernándezDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
Norberto Ortego-CentenoDepartment of Internal Medicine, Hospital Clínico San Cecilio, Granada, 18003, Spain.
Francisco-José García-HernándezDepartment of Internal Medicine, Hospital Universitario Virgen del Rocío, Sevilla, 41003, Spain.
Gerard EspinosaDepartment Autoimmune Diseases, Hospital Universitari Clínic, Barcelona, 08036, Spain.
Genaro Graña-GilDepartment of Rheumatology, Complejo Hospitalario Universitario A Coruña, A Coruña, 15006, Spain.
Juan Sánchez-BursónDepartment of Rheumatology, Hospital Universitario de Valme, Sevilla, 41014, Spain.
María Rosa JuliáDepartment of Immunology, Hospital Universitari Son Espases, Palma de Mallorca, 07120, Spain.
Roser SolansDepartment of Internal Medicine, Autoimmune Systemic Diseases Unit, Hospital Vall d'Hebron, Universidad Autonoma de Barcelona, Barcelona, 08035, Spain.
Ricardo BlancoDepartment of Rheumatology, Hospital Universitario Marqués de Valdecilla, Santander, 39008, Spain.
Ana-Celia Barnosi-MarínDepartment of Internal Medicine, Complejo Hospitalario Torrecárdenas, Almería, 04009, Spain.
Ricardo Gómez De la TorreDepartment of Internal Medicine, Hospital Universitario Central de Asturias, Asturias, 33011, Spain.
Patricia FanloDepartment of Internal Medicine, Hospital Virgen del Camino, Pamplona, 31008, Spain.
Mónica Rodríguez-CarballeiraDeparment of Internal Medicine, Hospital Universitari Mútua Terrassa, Terrassa, 08221, Spain.
Luis Rodríguez-RodríguezDepartment of Rheumatology, Hospital Clínico San Carlos, Madrid, 28040, Spain.ORCID 0000-0002-2869-7861
Teresa CampsDepartment of Internal Medicine, Hospital Regional Universitario de Málaga, Málaga, 29010, Spain.
Santos CastañedaDepartment of Rheumatology, Hospital de la Princesa, IIS-Princesa, Madrid, 28006, Spain.
Juan-Jose Alegre-SanchoDepartment of Rheumatology, Hospital Universitario Doctor Peset, Valencia, 46017, Spain.
Javier MartínInstituto de Parasitología y Biomedicina "López-Neyra", CSIC, PTS Granada, Granada, 18016, Spain.
María Francisca González-EscribanoDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain. mariaf.gonzalez.sspa@juntadeandalucia.es.
Hospital Universitario Virgen del Rocío · ESComplejo Hospitalario Torrecárdenas · ESComplexo Hospitalario Universitario A Coruña · ESHospital Clínico San Carlos · ESHospital Regional Universitario de Málaga · ESHospital Universitari de Vic · ESHospital Universitario Central de Asturias · ESHospital Universitario de La Princesa · ESHospital Universitario de Valme · ESHospital Universitario Doctor Peset · ESHospital Universitario Son Espases · ESHospital Virgen del Camino · ESInstituto de Investigación Biosanitaria de Granada · ESInstituto de Parasitología y Biomedicina "López - Neyra" · ESMarqués de Valdecilla University Hospital · ESMútua Terrassa · ESUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Behçet's disease (BD) is an immune-mediated systemic disorder with a well-established association with HLA class I and other genes. BD has clinical overlap with many autoinflammatory diseases (AIDs). The aim of this study was to investigate the role of rare variants in seven genes involved in AIDs: CECR1, MEFV, MVK, NLRP3, NOD2, PSTPIP1 and TNFRSF1A using a next generation sequencing (NGS) approach in 355 BD patients. To check global association of each gene, 4 tests: SKAT, CollapseBt, C(α) and weighted KBAC were used. Databases: 1000 Genomes Project Phase 3, Infevers, HGMD and ClinVar and algorithms: PolyPhen2 and SIFT were consulted to collect information of the 62 variants found. All the genes resulted associated using SKAT but only 3 (MVK, NOD2 and PSTPIP1) with C(α) and weighted KBAC. When all the genes are considered, 40 variants were associated to AIDs in clinical databases and 25 were predicted as pathogenic at least by one of the algorithms. Including only MVK, NOD2 and PSTPIP1, the associated to AIDs variants found in BD were 20 and the predicted as pathogenic, 12. The maxima contribution corresponds to NOD2. This study supports influence of rare variants in genes involved in AIDs in the pathogenesis of BD.

Indexed as

MutationAdaptor Proteins, Signal TransducingAdenosine DeaminaseBehcet SyndromeCytoskeletal ProteinsFemaleGenetic Predisposition to DiseaseHigh-Throughput Nucleotide SequencingHumansInflammasomesInflammationIntercellular Signaling Peptides and ProteinsMaleNLR Family, Pyrin Domain-Containing 3 ProteinNod2 Signaling Adaptor ProteinPhosphotransferases (Alcohol Group Acceptor)ADA2 protein, humanAdaptor Proteins, Signal TransducingAdenosine DeaminaseCytoskeletal ProteinsInflammasomesIntercellular Signaling Peptides and ProteinsMEFV protein, humanmevalonate kinaseNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanNOD2 protein, humanNod2 Signaling Adaptor ProteinPhosphotransferases (Alcohol Group Acceptor)PSTPIP1 protein, humanPyrinReceptors, Tumor Necrosis Factor, Type ITNFRSF1A protein, human

Identifiers

PMID28814775
PMCPMC5559572
OpenAlexW2744938978

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.