Evidence map›Paper›PMID 28814737›Full record

ArticleScientific reports2017

Susceptibility of influenza A(H1N1)/pdm2009, seasonal A(H3N2) and B viruses to Oseltamivir in Guangdong, China between 2009 and 2014.

Shan-Shan Liu, Xiao-Yang Jiao, Sheng Wang, Wen-Zhe Su, Ling-Zhi Jiang, Xin Zhang, Chang-Wen Ke, Ping Xiong

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Journal of virology · 2019
    Article
  19. Article
  20. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Shan-Shan LiuDepartment of Pharmaceutical Engineering, South China Agricultural University, Guangzhou, 510640, China.
Xiao-Yang JiaoShantou University Medical College, Shantou, 515041, Guangdong, China.
Sheng WangKey Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China.
Wen-Zhe SuGuangzhou Centre for Disease Control and Prevention, Guangzhou, 510440, China.
Ling-Zhi JiangCollege of Life and Ocean Science, Shen zhen Key Laboratory of Microbial Genetic Engineering, Shenzhen University, Shen zhen, 518060, China.
Xin ZhangMedical Key Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, 511430, P.R. China.
Chang-Wen KeShantou University Medical College, Shantou, 515041, Guangdong, China. kecw1965@aliyun.com.
Ping XiongDepartment of Pharmaceutical Engineering, South China Agricultural University, Guangzhou, 510640, China. xp0000542003@scau.edu.cn.
Guangdong Provincial Center for Disease Control and Prevention · CNSouth China Agricultural University · CNGuangzhou Center for Disease Control and Prevention · CNHuazhong University of Science and Technology · CNShantou University Medical College · CNShenzhen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nasopharyngeal swabs were collected from patients through the influenza surveillance network of the CDC of Guangdong. All specimens between 2009 and 2014 were checked for influenza virus using MDCK cells and further subtyped. Of those collected, 542 H1N1pdm09, 230 A(H3N2)and 448 B viruses selected at random were subjected to fluorescence-based NAI assays. Viral RNA was extracted from resistant isolates, and their NA genes were amplified by RT-PCR. Alignment of nucleotides and amino acids was performed. We performed structural modelling and simulations of mutants using Modeller 9.x and AutoDock and analyzed conformations and binding affinities. All tested seasonal type B and H3N2 viruses from 2009 to 2014 remained sensitive to oseltamivir. However, there were five strains (out of 198 tested isolates acquired between June and September 2013) that were resistant to oseltamivir. Another three resistant strains were identified among isolates from March to April 2014. We found that 2013/2014 oseltamivir-resistant strains and 2012/2013/2014 oseltamivir-sensitive strains had all or some of the following mutations: N44S, N200S,V241I, I321V,N369K, N386 K and K432E. MutationsV241I, N369K, N386K and K432E, alone or in conjunction with H275Y, had a significant impact on the binding pattern and affinity of oseltamivir for neuraminidase, rendering neuraminidase less susceptible.

Indexed as

Amino Acid SequenceAnimalsAntiviral AgentsBase SequenceChinaDogsDrug Resistance, ViralHumansInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H3N2 SubtypeInfluenza B virusInfluenza, HumanMadin Darby Canine Kidney CellsMutationNeuraminidaseOseltamivirAntiviral AgentsNeuraminidaseOseltamivirRNA, Viral

Identifiers

PMID28814737
PMCPMC5559489
OpenAlexW2744650221

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.