Evidence map›Paper›PMID 28813461›Full record

ArticlePloS one2017

Epidemiology of Clostridium difficile in infants in Oxfordshire, UK: Risk factors for colonization and carriage, and genetic overlap with regional C. difficile infection strains.

Nicole Stoesser, David W Eyre, T Phuong Quan, Heather Godwin, Gemma Pill, Emily Mbuvi, Alison Vaughan, David Griffiths, Jessica Martin, Warren Fawley and 13 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 90 citations in OpenAlex.

  1. Trial
  2. Frontiers in immunology · 2019
    Trial
  3. Antibiotics (Basel, Switzerland) · 2026
    Article
  4. Article
  5. Article
  6. Clinical microbiology reviews · 2024
    Review
  7. Molecular Epidemiology ofOpen forum infectious diseases · 2024
    Article
  8. Journal of medical microbiology · 2024
    Review
  9. Analysis of risk factors for community-acquiredTranslational pediatrics · 2023
    Article
  10. Article
  11. Article
  12. Microorganisms · 2023
    Article
  13. Prevalence and risk factors of toxigenicFrontiers in medicine · 2023
    Article
  14. Early Life Antimicrobial Exposure: Impact onAntibiotics (Basel, Switzerland) · 2022
    Article
  15. Clostridioides difficile colonization among very young children in resource-limited settings.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2022
    Article
  16. Faecal carriage ofEpidemiology and infection · 2022
    Article
  17. Molecular epidemiology ofFrontiers in public health · 2022
    Article
  18. Article
  19. Gut Microbiota Diversity of Preterm Neonates Is Associated WithFrontiers in cellular and infection microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 4 countries.

Nicole StoesserNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.ORCID http://orcid.org/0000-0002-4508-7969
David W EyreNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
T Phuong QuanNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Heather GodwinNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Gemma PillNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Emily MbuviNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Alison VaughanNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
David GriffithsNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Jessica MartinLeeds Teaching Hospitals and University of Leeds, Department of Microbiology, Old Medical School, Leeds General Infirmary, Leeds, United Kingdom.
Warren FawleyPublic Health England (Leeds laboratory), Old Medical School, Leeds General Infirmary, Leeds, United Kingdom.
Kate E DingleNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Sarah OakleyMicrobiology Laboratory, John Radcliffe Hospital, Headington, United Kingdom.
Kazimierz WanelikNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
John M FinneyNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Melina KachrimanidouDepartment of Microbiology, Medical School, Aristotle University of Thessaloniki, University Campus, Thessaloniki, Greece.
Catrin E MooreNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Sherwood GorbachTufts University School of Medicine, Boston, Massachusetts, United States of America.
Thomas V RileyMicrobiology and Immunology, School of Pathology and Laboratory Medicine, The University of Western Australia, Crawley, Western Australia, Australia.
Derrick W CrookNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Tim E A PetoNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Mark H WilcoxLeeds Teaching Hospitals and University of Leeds, Department of Microbiology, Old Medical School, Leeds General Infirmary, Leeds, United Kingdom.
A Sarah WalkerNuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Headington, United Kingdom.
Modernising Medical Microbiology Informatics Group (MMMIG)
John Radcliffe Hospital · GBLeeds General Infirmary · GBAristotle University of Thessaloniki · GRThe University of Western Australia · AUTufts University · US

Funding

Medical Research Council G0800778Wellcome Trust
6 · The paper itself

Abstract

backgroundApproximately 30-40% of children <1 year of age are Clostridium difficile colonized, and may represent a reservoir for adult C. difficile infections (CDI). Risk factors for colonization with toxigenic versus non-toxigenic C. difficile strains and longitudinal acquisition dynamics in infants remain incompletely characterized.

methodsPredominantly healthy infants (≤2 years) were recruited in Oxfordshire, UK, and provided ≥1 fecal samples. Independent risk factors for toxigenic/non-toxigenic C. difficile colonization and acquisition were identified using multivariable regression. Infant C. difficile isolates were whole-genome sequenced to assay genetic diversity and prevalence of toxin-associated genes, and compared with sequenced strains from Oxfordshire CDI cases.

results338/365 enrolled infants provided 1332 fecal samples, representing 158 C. difficile colonization or carriage episodes (107[68%] toxigenic). Initial colonization was associated with age, and reduced with breastfeeding but increased with pet dogs. Acquisition was associated with older age, Caesarean delivery, and diarrhea. Breastfeeding and pre-existing C. difficile colonization reduced acquisition risk. Overall 13% of CDI C. difficile strains were genetically related to infant strains. 29(18%) infant C. difficile sequences were consistent with recent direct/indirect transmission to/from Oxfordshire CDI cases (≤2 single nucleotide variants [SNVs]); 79(50%) shared a common origin with an Oxfordshire CDI case within the last ~5 years (0-10 SNVs). The hypervirulent, epidemic ST1/ribotype 027 remained notably absent in infants in this large study, as did other lineages such as STs 10/44 (ribotype 015); the most common strain in infants was ST2 (ribotype 020/014)(22%).

conclusionsIn predominantly healthy infants without significant healthcare exposure C. difficile colonization and acquisition reflect environmental exposures, with pet dogs identified as a novel risk factor. Genetic overlap between some infant strains and those isolated from CDI cases suggest common community reservoirs of these C. difficile lineages, contrasting with those lineages found only in CDI cases, and therefore more consistent with healthcare-associated spread.

Indexed as

Carrier StateClostridioides difficileClostridium InfectionsCluster AnalysisCross InfectionDiarrheaDNA, BacterialEvolution, MolecularFecesFemaleGenetic VariationHumansInfantInfant, NewbornMalePrevalenceDNA, Bacterial

Identifiers

PMID28813461
PMCPMC5559064
OpenAlexW2737773354

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.