Evidence map›Paper›PMID 28811613›Full record

ArticleScientific reports2017

Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq.

M Volpicella, C Leoni, C Manzari, M Chiara, E Picardi, E Piancone, F Italiano, A D'Erchia, M Trotta, D S Horner and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Bacterial copper storage proteins.The Journal of biological chemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

M VolpicellaDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Bari, Italy.
C LeoniDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Bari, Italy.
C ManzariIBIOM-CNR, Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Bari, Italy.
M ChiaraDepartment of Biosciences, University of Milan, Milan, Italy.
E PicardiDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Bari, Italy.ORCID 0000-0002-6549-0114
E PianconeDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Bari, Italy.
F ItalianoIPCF-CNR, Institute for Chemical-Physical Processes, Bari, Italy.
A D'ErchiaDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Bari, Italy.
M TrottaIPCF-CNR, Institute for Chemical-Physical Processes, Bari, Italy.ORCID 0000-0002-8220-4597
D S HornerIBIOM-CNR, Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Bari, Italy.
G PesoleDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Bari, Italy.
L R CeciIBIOM-CNR, Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Bari, Italy. l.ceci@ibiom.cnr.it.ORCID 0000-0001-9032-791X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nickel acts as cofactor for a number of enzymes of many bacteria species. Its homeostasis is ensured by proteins working as ion efflux or accumulation systems. These mechanisms are also generally adopted to counteract life-threatening high extra-cellular Ni

Indexed as

Biodegradation, EnvironmentalGene Expression ProfilingGene Expression Regulation, BacterialGenomicsHigh-Throughput Nucleotide SequencingNickelSequence Analysis, RNASphingomonadaceaeTranscriptomeNickel

Identifiers

PMID28811613
PMCPMC5557971

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.