Evidence map›Paper›PMID 28811542›Full record

ArticleScientific reports2017

Identification, replication and characterization of epigenetic remodelling in the aging genome: a cross population analysis.

Shuxia Li, Lene Christiansen, Kaare Christensen, Torben A Kruse, Paul Redmond, Riccardo E Marioni, Ian J Deary, Qihua Tan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
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  10. Aging and obesity prime the methylome and transcriptome of adipose stem cells for disease and dysfunction.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
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  17. Heterochromatin: an epigenetic point of view in aging.Experimental & molecular medicine · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Shuxia LiDepartment of Clinical Research, Unit of Human Genetics, University of Southern Denmark, Odense, Denmark.
Lene ChristiansenDepartment of Public Health, Epidemiology, Biostatistics and Biodemography, University of Southern Denmark, Odense, Denmark.
Kaare ChristensenDepartment of Public Health, Epidemiology, Biostatistics and Biodemography, University of Southern Denmark, Odense, Denmark.
Torben A KruseDepartment of Clinical Research, Unit of Human Genetics, University of Southern Denmark, Odense, Denmark.
Paul RedmondDepartment of Psychology, University of Edinburgh, Edinburgh, United Kingdom.
Riccardo E MarioniCentre for Genomic and Experimental Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Ian J DearyDepartment of Psychology, University of Edinburgh, Edinburgh, United Kingdom.
Qihua TanDepartment of Clinical Research, Unit of Human Genetics, University of Southern Denmark, Odense, Denmark. qtan@health.sdu.dk.ORCID 0000-0003-3194-0030
University of Southern Denmark · DKUniversity of Edinburgh · GBThe University of Queensland · AU

Funding

Medical Research Council G0700704Medical Research Council MR/K026992/1
6 · The paper itself

Abstract

Aging is a complex biological process regulated by multiple cellular pathways and molecular mechanisms including epigenetics. Using genome-wide DNA methylation data measured in a large collection of Scottish old individuals, we performed discovery association analysis to identify age-methylated CpGs and replicated them in two independent Danish cohorts. The double-replicated CpGs were characterized by distribution over gene regions and location in relation to CpG islands. The replicated CpGs were further characterized by involvement in biological pathways to study their functional implications in aging. We identified 67,604 age-associated CpG sites reaching genome-wide significance of FWER <0.05, 86% demethylated with increasing age. Double-replication resulted in 5,168 CpGs (39% age-methylated and 61% age-demethylated) which were characterized by high concentration of age-methylated CpGs at 1stExon and TSS200 and a dominant pattern of age-demethylated CpGs at other gene regions, and by overwhelming age-related methylation in CpG islands and demethylation at shore/shelf and open sea. The differential distribution patterns over gene regions for methylated and demethylated CpGs both relate to reduced gene activity during aging. Pathway analysis showed that age-dependent methylations were especially involved in cellular signalling activities while demethylations particularly linked to functions of the extracellular matrix, all implicated in the aging process and age-related disease risk.

Indexed as

Epigenesis, GeneticEpigenomicsAgingCpG IslandsCross-Sectional StudiesDNA MethylationExonsGenetics, PopulationGenome-Wide Association StudyHumansIntronsLongitudinal StudiesSignal TransductionUntranslated RegionsUntranslated Regions

Identifiers

PMID28811542
PMCPMC5557932
OpenAlexW2745231374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.