Evidence map›Paper›PMID 28809946›Full record

ArticlePloS one2017

Structure-function analyses of metal-binding sites of HypA reveal residues important for hydrogenase maturation in Helicobacter pylori.

Faith C Blum, Heidi Q Hu, Stephanie L Servetas, Stéphane L Benoit, Robert J Maier, Michael J Maroney, D Scott Merrell

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Chronic Diarrhea Due toPathogens (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Zerumbone InhibitsMolecules (Basel, Switzerland) · 2021
    Article
  5. Evodiamine InhibitsInternational journal of molecular sciences · 2021
    Article
  6. Review
  7. Bimodal Nickel-Binding Site onInorganic chemistry · 2019
    Article
  8. Article
  9. Article
  10. Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
  11. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Faith C BlumDepartment of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, MD, United States of America.
Heidi Q HuDepartment of Chemistry and Program in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, MA, United States of America.
Stephanie L ServetasDepartment of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, MD, United States of America.
Stéphane L BenoitDepartment of Microbiology, University of Georgia, Athens, GA, United States of America.
Robert J MaierDepartment of Microbiology, University of Georgia, Athens, GA, United States of America.
Michael J MaroneyDepartment of Chemistry and Program in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, MA, United States of America.
D Scott MerrellDepartment of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, MD, United States of America.ORCID http://orcid.org/0000-0001-7095-5177
Uniformed Services University of the Health Sciences · USUniversity of Georgia · USUniversity of Massachusetts Amherst · US

Funding

Structural Parameters Involved in Metal RecognitionR01GM069696 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI MARONEY, MICHAEL J · 2004 to 2017
$3.3M
Helicobacter pylori CagA toxin polymorphismR21AI121517 · NIAID · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI MERRELL, D. SCOTT · 2016 to 2017
$420k
Transcriptional Control of Helicobacter pylori VirulenceR21AI109405 · NIAID · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI MERRELL, D. SCOTT · 2014 to 2015
$418k
NIAID NIH HHS R21 AI109405NIAID NIH HHS R21 AI121517NIGMS NIH HHS R01 GM069696
6 · The paper itself

Abstract

The nickel-containing enzymes of Helicobacter pylori, urease and hydrogenase, are essential for efficient colonization in the human stomach. The insertion of nickel into urease and hydrogenase is mediated by the accessory protein HypA. HypA contains an N-terminal nickel-binding site and a dynamic structural zinc-binding site. The coordination of nickel and zinc within HypA is known to be critical for urease maturation and activity. Herein, we test the hydrogenase activity of a panel of H. pylori mutant strains containing point mutations within the nickel- and zinc-binding sites. We found that the residues that are important for hydrogenase activity are those that were similarly vital for urease activity. Thus, the zinc and metal coordination sites of HypA play similar roles in urease and hydrogenase maturation. In other pathogenic bacteria, deletion of hydrogenase leads to a loss in acid resistance. Thus, the acid resistance of two strains of H. pylori containing a hydrogenase deletion was also tested. These mutant strains demonstrated wild-type levels of acid resistance, suggesting that in H. pylori, hydrogenase does not play a role in acid resistance.

Indexed as

Bacterial ProteinsBinding SitesHelicobacter pyloriHydrogenaseHydrogen-Ion ConcentrationNickelProtein BindingUreaseZincBacterial ProteinsHydrogenaseNickelUreaseZinc

Identifiers

PMID28809946
PMCPMC5557546
OpenAlexW2749742583

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.