Evidence map›Paper›PMID 28809851›Full record

ArticleThe ISME journal2017

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

Yi Yang, Steven A Higgins, Jun Yan, Burcu Şimşir, Karuna Chourey, Ramsunder Iyer, Robert L Hettich, Brett Baldwin, Dora M Ogles, Frank E Löffler

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 143 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Dehalogenation of Chlorinated Ethenes to Ethene by a Novel Isolate, "Applied and environmental microbiology · 2022
    Article
  11. Ultrastructure of Organohalide-RespiringApplied and environmental microbiology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Genome Sequence of "Microbiology resource announcements · 2020
    Article
  17. Recent advances in the biodegradation of polychlorinated biphenyls.World journal of microbiology & biotechnology · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Yi YangDepartment of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN, USA.
Steven A HigginsCenter for Environmental Biotechnology, University of Tennessee, Knoxville, TN, USA.
Jun YanCenter for Environmental Biotechnology, University of Tennessee, Knoxville, TN, USA.
Burcu ŞimşirDepartment of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN, USA.
Karuna ChoureyChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Ramsunder IyerChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-0969-4112
Robert L HettichJoint Institute for Biological Sciences (JIBS), Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Brett BaldwinMicrobial Insights, Knoxville, TN, USA.
Dora M OglesMicrobial Insights, Knoxville, TN, USA.
Frank E LöfflerDepartment of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN, USA.
Oak Ridge National Laboratory · USMicrobial Insights (United States) · USUniversity of Tennessee at Knoxville · US

Funding

Biogeochemical Controls over Corrinoid Bioavailability to Organohalide-RespiringR01ES024294 · NIEHS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI LOEFFLER, FRANK E. · 2014 to 2017
$775k
NIEHS NIH HHS R01 ES024294
6 · The paper itself

Abstract

Organohalide-respiring bacteria have key roles in the natural chlorine cycle; however, most of the current knowledge is based on cultures from contaminated environments. We demonstrate that grape pomace compost without prior exposure to chlorinated solvents harbors a Dehalogenimonas (Dhgm) species capable of using chlorinated ethenes, including the human carcinogen and common groundwater pollutant vinyl chloride (VC) as electron acceptors. Grape pomace microcosms and derived solid-free enrichment cultures were able to dechlorinate trichloroethene (TCE) to less chlorinated daughter products including ethene. 16S rRNA gene amplicon and qPCR analyses revealed a predominance of Dhgm sequences, but Dehalococcoides mccartyi (Dhc) biomarker genes were not detected. The enumeration of Dhgm 16S rRNA genes demonstrated VC-dependent growth, and 6.55±0.64 × 10

Indexed as

AustraliaBacterial ProteinsBiodegradation, EnvironmentalChloroflexiCompostingEthylenesGroundwaterHalogenationHydrolasesProteomicsTrichloroethyleneVinyl ChlorideVitisWater Pollutants, ChemicalBacterial ProteinsethyleneEthylenesHydrolasesTrichloroethyleneVinyl ChlorideWater Pollutants, Chemical

Identifiers

PMID28809851
PMCPMC5702733
OpenAlexW2749079494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.