Evidence map›Paper›PMID 28808433›Full record

ArticleJournal of applied crystallography2017

FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images.

Kenneth R Beyerlein, Thomas A White, Oleksandr Yefanov, Cornelius Gati, Ivan G Kazantsev, Nicolai Fog-Gade Nielsen, Peter M Larsen, Henry N Chapman, Søren Schmidt

Abstract read
In one paragraph

Article in Journal of applied crystallography, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
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  5. Frontiers in chemistry · 2025
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  14. Article
  15. SPIND-TC: an indexing method for two-color X-ray diffraction data.Acta crystallographica. Section A, Foundations and advances · 2020
    Article
  16. pinkIndexer - a universal indexer for pink-beam X-ray and electron diffraction snapshots.Acta crystallographica. Section A, Foundations and advances · 2020
    Article
  17. Article
  18. Review
  19. XGANDALF - extended gradient descent algorithm for lattice finding.Acta crystallographica. Section A, Foundations and advances · 2019
    Article
  20. Processing serial crystallography data with CrystFEL: a step-by-step guide.Acta crystallographica. Section D, Structural biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kenneth R BeyerleinCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0002-7701-4369
Thomas A WhiteCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Oleksandr YefanovCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Cornelius GatiCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Ivan G KazantsevInstitute of Computational Mathematics and Mathematical Geophysics, Lavrentieva 6, 630090 Novosibirsk, Russian Federation.
Nicolai Fog-Gade NielsenDepartment of Physics, Technical University of Denmark, DK-2800, Denmark.
Peter M LarsenDepartment of Physics, Technical University of Denmark, DK-2800, Denmark.
Henry N ChapmanCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Søren SchmidtDepartment of Physics, Technical University of Denmark, DK-2800, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel algorithm for indexing multiple crystals in snapshot X-ray diffraction images, especially suited for serial crystallography data, is presented. The algorithm, FELIX, utilizes a generalized parametrization of the Rodrigues-Frank space, in which all crystal systems can be represented without singularities. The new algorithm is shown to be capable of indexing more than ten crystals per image in simulations of cubic, tetragonal and monoclinic crystal diffraction patterns. It is also used to index an experimental serial crystallography dataset from lysozyme microcrystals. The increased number of indexed crystals is shown to result in a better signal-to-noise ratio, and fewer images are needed to achieve the same data quality as when indexing one crystal per image. The relative orientations between the multiple crystals indexed in an image show a slight tendency of the lysozme microcrystals to adhere on ([Formula: see text]10) facets.

Indexed as

materials scienceserial crystallographySFXstructural biology

Identifiers

PMID28808433
PMCPMC5541352

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.