Evidence map›Paper›PMID 28808431›Full record

ArticleJournal of applied crystallography2017

Reconstructing three-dimensional protein crystal intensities from sparse unoriented two-axis X-ray diffraction patterns.

Ti-Yen Lan, Jennifer L Wierman, Mark W Tate, Hugh T Philipp, Veit Elser, Sol M Gruner

Erratum issuedAbstract read
In one paragraph

Article in Journal of applied crystallography, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Ti-Yen LanLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.
Jennifer L WiermanCornell High Energy Synchrotron Source (CHESS), Cornell University, Ithaca, NY 14853, USA.
Mark W TateLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.
Hugh T PhilippLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.
Veit ElserLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.
Sol M GrunerLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.ORCID https://orcid.org/0000-0002-1171-4426

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
NIGMS NIH HHS P41 GM103485NIGMS NIH HHS T32 GM008267
6 · The paper itself

Abstract

Recently, there has been a growing interest in adapting serial microcrystallography (SMX) experiments to existing storage ring (SR) sources. For very small crystals, however, radiation damage occurs before sufficient numbers of photons are diffracted to determine the orientation of the crystal. The challenge is to merge data from a large number of such 'sparse' frames in order to measure the full reciprocal space intensity. To simulate sparse frames, a dataset was collected from a large lysozyme crystal illuminated by a dim X-ray source. The crystal was continuously rotated about two orthogonal axes to sample a subset of the rotation space. With the EMC algorithm [expand-maximize-compress; Loh & Elser (2009).

Indexed as

EMC algorithmprotein microcrystallographysparse datasynchrotron radiation sourcesX-ray serial microcrystallography

Identifiers

PMID28808431
PMCPMC5541350

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.