Evidence map›Paper›PMID 28808237›Full record

ArticleScientific reports2017

Coding and small non-coding transcriptional landscape of tuberous sclerosis complex cortical tubers: implications for pathophysiology and treatment.

James D Mills, Anand M Iyer, Jackelien van Scheppingen, Anika Bongaarts, Jasper J Anink, Bart Janssen, Till S Zimmer, Wim G Spliet, Peter C van Rijen, Floor E Jansen and 19 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Tuberous sclerosis complex.Nature reviews. Disease primers · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 12 institutions in 7 countries.

James D MillsDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Anand M IyerDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Jackelien van ScheppingenDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Anika BongaartsDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Jasper J AninkDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Bart JanssenGenomeScan BV, Leiden, The Netherlands.
Till S ZimmerDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Wim G SplietDepartment of Pathology, University Medical Center Utrecht, Utrecht, The Netherlands.
Peter C van RijenDepartment of Neurosurgery, Rudolf Magnus Institute for Neuroscience, University Medical Center, Utrecht, The Netherlands.
Floor E JansenDepartment of Pediatric Neurology, Rudolf Magnus Institute for Neuroscience, University Medical Center, Utrecht, The Netherlands.
Martha FeuchtDepartment of Pediatrics, Medical University Vienna, Vienna, Austria.
Johannes A HainfellnerInstitute of Neurology, Medical University Vienna, Vienna, Austria.
Pavel KrsekDepartment of Pediatric Neurology, 2nd Faculty of Medicine and Motol University Hospital, Prague, Czech Republic.
Josef ZamecnikDepartment of Pathology and Molecular Medicine, 2nd Faculty of Medicine and Motol University Hospital, Prague, Czech Republic.
Katarzyna KotulskaDepartment of Neurology and Epileptology, The Children's Memorial Health Institute, and Department of Child Neurology, Warsaw Medical University, Warsaw, Poland.
Sergiusz JozwiakDepartment of Neurology and Epileptology, The Children's Memorial Health Institute, and Department of Child Neurology, Warsaw Medical University, Warsaw, Poland.
Anna JansenPediatric Neurology Unit - UZ Brussel, Brussels, Belgium.
Lieven LagaeDepartment of Development and Regeneration-Section Pediatric Neurology, University Hospitals KU Leuven, Leuven, Belgium.
Paolo CuratoloSystems Medicine Department, Child Neurology and Psychiatry Unit, Tor Vergata University Hospital of Rome, Rome, Italy.
David J KwiatkowskiDepartment of Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.
R Jeroen PasterkampDepartment of Translational Neuroscience, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands.ORCID 0000-0003-1631-6440
Ketharini SenthilkumarDepartment of Translational Neuroscience, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands.
Lars von OerthelSwammerdam Institute for Life Sciences, Center for Neuroscience, University of Amsterdam, Amsterdam, The Netherlands.
Marco F HoekmanSwammerdam Institute for Life Sciences, Center for Neuroscience, University of Amsterdam, Amsterdam, The Netherlands.
Jan A GorterSwammerdam Institute for Life Sciences, Center for Neuroscience, University of Amsterdam, Amsterdam, The Netherlands.
Peter B CrinoDepartment of Neurology, University of Maryland School of Medicine, Baltimore, MD, USA.
Angelika MühlebnerDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Brendon P SciclunaCenter for Experimental & Molecular Medicine, and Department of Clinical Epidemiology, Biostatistics and Bioinformatics, Academic Medical Center University of Amsterdam, Amsterdam, The Netherlands.
Eleonora AronicaDepartment of (Neuro) Pathology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands. e.aronica@amc.uva.nl.
Amsterdam UMC Location University of Amsterdam · NLUniversity Medical Center Utrecht · NLNetherlands Institute for Neuroscience · NLChildren's Memorial Health Institute · PLUniversity Hospital in Motol · CZBrigham and Women's Hospital · USGenomeScan (Netherlands) · NLKU Leuven · BEMedical University of Vienna · ATUniversitair Ziekenhuis Brussel · BEUniversity of Maryland, Baltimore · USUniversity of Rome Tor Vergata · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberous Sclerosis Complex (TSC) is a rare genetic disorder that results from a mutation in the TSC1 or TSC2 genes leading to constitutive activation of the mechanistic target of rapamycin complex 1 (mTORC1). TSC is associated with autism, intellectual disability and severe epilepsy. Cortical tubers are believed to represent the neuropathological substrates of these disabling manifestations in TSC. In the presented study we used high-throughput RNA sequencing in combination with systems-based computational approaches to investigate the complexity of the TSC molecular network. Overall we detected 438 differentially expressed genes and 991 differentially expressed small non-coding RNAs in cortical tubers compared to autopsy control brain tissue. We observed increased expression of genes associated with inflammatory, innate and adaptive immune responses. In contrast, we observed a down-regulation of genes associated with neurogenesis and glutamate receptor signaling. MicroRNAs represented the largest class of over-expressed small non-coding RNA species in tubers. In particular, our analysis revealed that the miR-34 family (including miR-34a, miR-34b and miR-34c) was significantly over-expressed. Functional studies demonstrated the ability of miR-34b to modulate neurite outgrowth in mouse primary hippocampal neuronal cultures. This study provides new insights into the TSC transcriptomic network along with the identification of potential new treatment targets.

Indexed as

AdolescentAdultAnimalsCerebral CortexChildChild, PreschoolEpilepsyFemaleHumansInfantMaleMechanistic Target of Rapamycin Complex 1MiceMice, Inbred C57BLMicroRNAsMiddle AgedMechanistic Target of Rapamycin Complex 1MicroRNAsMIRN34a microRNA, mouseTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 Protein

Identifiers

PMID28808237
PMCPMC5556011
OpenAlexW2743548915

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.