Evidence map›Paper›PMID 28808136›Full record

ArticleThe Plant cell2017

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

Jamie Waese, Jim Fan, Asher Pasha, Hans Yu, Geoffrey Fucile, Ruian Shi, Matthew Cumming, Lawrence A Kelley, Michael J Sternberg, Vivek Krishnakumar and 5 more

Abstract read
In one paragraph

Article in The Plant cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 230 papers.

0numbers the graph read from it
0cells of the map it votes in
230citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

230 citing papers in PubMed.

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  14. Natural variation links seedling hypocotyl growth with water loss in Arabidopsis.The Plant journal : for cell and molecular biology · 2026
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

170 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Jamie WaeseDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Jim FanDepartment of Computer Science, University of Waterloo, Ontario N2L 3G1, Canada.
Asher PashaDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario M5S 3B2, Canada.ORCID http://orcid.org/0000-0002-9315-0520
Hans YuDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Geoffrey FucileSIB Swiss Institute of Bioinformatics, sciCORE Computing Center, University of Basel, CH-4056 Basel, Switzerland.
Ruian ShiDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Matthew CummingDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Lawrence A KelleyImperial College London, London SW7 2AZ, United Kingdom.ORCID http://orcid.org/0000-0002-3210-2656
Michael J SternbergImperial College London, London SW7 2AZ, United Kingdom.ORCID http://orcid.org/0000-0002-1884-5445
Vivek KrishnakumarAraport.org/J. Craig Venter Institute, Rockville, Maryland 20850.ORCID http://orcid.org/0000-0002-5227-0200
Erik FerlantiAraport.org/J. Craig Venter Institute, Rockville, Maryland 20850.ORCID http://orcid.org/0000-0001-5128-1584
Jason MillerAraport.org/J. Craig Venter Institute, Rockville, Maryland 20850.ORCID http://orcid.org/0000-0002-6912-2925
Chris TownAraport.org/J. Craig Venter Institute, Rockville, Maryland 20850.
Wolfgang StuerzlingerSchool of Interactive Arts and Technology, Simon Fraser University, British Columbia V3T 0A3, Canada.
Nicholas J ProvartDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario M5S 3B2, Canada nicholas.provart@utoronto.ca.ORCID http://orcid.org/0000-0001-5551-7232

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A big challenge in current systems biology research arises when different types of data must be accessed from separate sources and visualized using separate tools. The high cognitive load required to navigate such a workflow is detrimental to hypothesis generation. Accordingly, there is a need for a robust research platform that incorporates all data and provides integrated search, analysis, and visualization features through a single portal. Here, we present ePlant (http://bar.utoronto.ca/eplant), a visual analytic tool for exploring multiple levels of

Indexed as

BotanySoftwareStatistics as TopicSystems BiologyBase SequenceChromosomes, PlantGene Expression Regulation, PlantSubcellular FractionsUser-Computer Interface

Identifiers

PMID28808136
PMCPMC5590499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.