Evidence map›Paper›PMID 28808053›Full record

ArticleThe Journal of biological chemistry2017

Navigating the conformational landscape of G protein-coupled receptor kinases during allosteric activation.

Xin-Qiu Yao, M Claire Cato, Emily Labudde, Tyler S Beyett, John J G Tesmer, Barry J Grant

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Article
  7. Targeting G protein-coupled receptor kinases (GRKs) to G protein-coupled receptors.Current opinion in endocrine and metabolic research · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Xin-Qiu YaoFrom the Departments of Computational Medicine and Bioinformatics.
M Claire CatoBiological Chemistry, and.
Emily LabuddeLife Sciences Institute and.
Tyler S BeyettLife Sciences Institute and.
John J G TesmerBiological Chemistry, and tesmerjj@umich.edu.
Barry J GrantDivision of Biological Sciences, University of California San Diego, La Jolla, California 92093 bjgrant@ucsd.edu.ORCID 0000-0002-2215-4196
DSM (Netherlands) · NLInstitute of Bioinformatics · INUniversity of California San Diego · USUniversity of Michigan · US

Funding

INTERDEPARTMENTAL TRAINING IN PHARMACOLOGICAL SCIENCEST32GM007767 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ISOM, LORI L. · 1985 to 2019
$10.2M
Structure, function, and inhibition of G protein-coupled receptor kinasesR01HL071818 · NHLBI · UNIVERSITY OF TEXAS AUSTIN · PI TESMER, JOHN · 2004 to 2023
$7.1M
MICHIGAN CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008597 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN · 1996 to 2018
$5.0M
Regulation of the molecular motor kinesin-IR01GM070862 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VERHEY, KRISTEN J. · 2005 to 2018
$4.2M
IKKepsilon/TBK1 Inhibitors for the Treatment of Obesity and Type 2 DiabetesR01DK100319 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SALTIEL, ALAN R. · 2014 to 2017
$2.3M
Structure and Function of the LPLA2/LCAT Acyltransferase FamilyR01HL122416 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TESMER, JOHN · 2015 to 2018
$1.9M
NHLBI NIH HHS R01 HL071818NHLBI NIH HHS R01 HL122416NIDDK NIH HHS R01 DK100319NIGMS NIH HHS R01 GM070862NIGMS NIH HHS T32 GM007767NIGMS NIH HHS T32 GM008597
6 · The paper itself

Abstract

G protein-coupled receptors (GPCRs) are essential for transferring extracellular signals into carefully choreographed intracellular responses controlling diverse aspects of cell physiology. The duration of GPCR-mediated signaling is primarily regulated via GPCR kinase (GRK)-mediated phosphorylation of activated receptors. Although many GRK structures have been reported, the mechanisms underlying GRK activation are not well-understood, in part because it is unknown how these structures map to the conformational landscape available to this enzyme family. Unlike most other AGC kinases, GRKs rely on their interaction with GPCRs for activation and not phosphorylation. Here, we used principal component analysis of available GRK and protein kinase A crystal structures to identify their dominant domain motions and to provide a framework that helps evaluate how close each GRK structure is to being a catalytically competent state. Our results indicated that disruption of an interface formed between the large lobe of the kinase domain and the regulator of G protein signaling homology domain (RHD) is highly correlated with establishment of the active conformation. By introducing point mutations in the GRK5 RHD-kinase domain interface, we show with both

Indexed as

Models, MolecularProtein Processing, Post-TranslationalAllosteric RegulationAmino Acid SubstitutionAnimalsCell LineComputational BiologyCrystallography, X-RayDatabases, ProteinEnergy TransferEnzyme ActivationExpert SystemsG-Protein-Coupled Receptor Kinase 5HumansInsectaKineticsG-Protein-Coupled Receptor Kinase 5GRK5 protein, humanRecombinant Fusion Proteinsallosteric regulationG protein-coupled receptor (GPCR)Michaelis-Mentenmolecular dynamicsserine/threonine protein kinasestructure-function

Identifiers

PMID28808053
PMCPMC5625036
OpenAlexW2747027054

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.