Evidence map›Paper›PMID 28808004›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion.

Marina Katava, Guillaume Stirnemann, Marco Zanatta, Simone Capaccioli, Maria Pachetti, K L Ngai, Fabio Sterpone, Alessandro Paciaroni

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  6. Article
  7. Review
  8. The number of catalytic cycles in an enzyme's lifetime and why it matters to metabolic engineering.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
  11. Thermal stability of single-domain antibodies estimated by molecular dynamics simulations.Protein science : a publication of the Protein Society · 2019
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marina KatavaLaboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, CNRS Unité Propre de Recherche 9080, Université Paris Diderot, Sorbonne Paris Cité, 75005 Paris, France.
Guillaume StirnemannLaboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, CNRS Unité Propre de Recherche 9080, Université Paris Diderot, Sorbonne Paris Cité, 75005 Paris, France.
Marco ZanattaDipartimento di Informatica, Università di Verona, 37134 Verona, Italy.
Simone CapaccioliDipartimento di Fisica, Università di Pisa and Istituto per i Processi Chimico-Fisici-Consiglio Nazionale delle Ricerche, 56127 Pisa, Italy.ORCID 0000-0003-4866-8918
Maria PachettiDipartimento di Fisica, Università di Pisa and Istituto per i Processi Chimico-Fisici-Consiglio Nazionale delle Ricerche, 56127 Pisa, Italy.
K L NgaiDipartimento di Fisica, Università di Pisa and Istituto per i Processi Chimico-Fisici-Consiglio Nazionale delle Ricerche, 56127 Pisa, Italy.
Fabio SterponeLaboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, CNRS Unité Propre de Recherche 9080, Université Paris Diderot, Sorbonne Paris Cité, 75005 Paris, France; alessandro.paciaroni@unipg.it fabio.sterpone@ibpc.fr.
Alessandro PaciaroniDipartimento di Fisica e Geologia, Università di Perugia, 06123 Perugia, Italy alessandro.paciaroni@unipg.it fabio.sterpone@ibpc.fr.ORCID 0000-0002-3952-1634

Funding

European Research Council 258748
6 · The paper itself

Abstract

Internal subnanosecond timescale motions are key for the function of proteins, and are coupled to the surrounding solvent environment. These fast fluctuations guide protein conformational changes, yet their role for protein stability, and for unfolding, remains elusive. Here, in analogy with the Lindemann criterion for the melting of solids, we demonstrate a common scaling of structural fluctuations of lysozyme protein embedded in different environments as the thermal unfolding transition is approached. By combining elastic incoherent neutron scattering and advanced molecular simulations, we show that, although different solvents modify the protein melting temperature, a unique dynamical regime is attained in proximity of thermal unfolding in all solvents that we tested. This solvation shell-independent dynamical regime arises from an equivalent sampling of the energy landscape at the respective melting temperatures. Thus, we propose that a threshold for the conformational entropy provided by structural fluctuations of proteins exists, beyond which thermal unfolding is triggered.

Indexed as

Protein UnfoldingComputer SimulationEgg ProteinsModels, ChemicalModels, MolecularMuramidaseProtein ConformationProtein StabilityTemperatureTransition TemperatureEgg ProteinsMuramidasecell thermal stabilityLindemann criterionmolecular dynamics simulationneutron scatteringprotein dynamics

Identifiers

PMID28808004
PMCPMC5584445

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.