Evidence map›Paper›PMID 28806970›Full record

ArticleBMC genomics2017

Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals.

Catalina Aguilar, Jean-Baptiste Raina, Cherie A Motti, Sylvain Fôret, David C Hayward, Bruno Lapeyre, David G Bourne, David J Miller

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Catalina AguilarAIMS@JCU, and Department of Molecular and Cell Biology, James Cook University, Townsville, 4811, Queensland, Australia.
Jean-Baptiste RainaClimate Change Cluster (C3), Faculty of Science, University of Technology, Sydney, NSW, 2007, Australia.
Cherie A MottiAustralian Institute of Marine Science, Townsville, 4810, Queensland, Australia.
Sylvain FôretARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, 4811, Queensland, Australia.
David C HaywardEvolution and Ecology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia.
Bruno LapeyreLaboratoire d'excellence CORAIL, Centre de Recherches Insulaires et Observatoire de l'Environnement (CRIOBE), Moorea, B.P. 1013, Papeete, French Polynesia.
David G BourneAIMS@JCU, and Department of Molecular and Cell Biology, James Cook University, Townsville, 4811, Queensland, Australia. david.bourne@jcu.edu.au.
David J MillerAIMS@JCU, and Department of Molecular and Cell Biology, James Cook University, Townsville, 4811, Queensland, Australia. david.miller@jcu.edu.au.
ARC Centre of Excellence for Coral Reef Studies · AUAustralian Institute of Marine Science · AUAustralian National University · AUCentre de Recherches Insulaires et Observatoire de l'Environnement · PFJames Cook University · AUUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDimethylsulfoniopropionate (DMSP) is a small sulphur compound which is produced in prodigious amounts in the oceans and plays a pivotal role in the marine sulfur cycle. Until recently, DMSP was believed to be synthesized exclusively by photosynthetic organisms; however we now know that corals and specific bacteria can also produce this compound. Corals are major sources of DMSP, but the molecular basis for its biosynthesis is unknown in these organisms.

resultsHere we used salinity stress, which is known to trigger DMSP production in other organisms, in conjunction with transcriptomics to identify coral genes likely to be involved in DMSP biosynthesis. We focused specifically on both adults and juveniles of the coral Acropora millepora: after 24 h of exposure to hyposaline conditions, DMSP concentrations increased significantly by 2.6 fold in adult corals and 1.2 fold in juveniles. Concomitantly, candidate genes enabling each of the necessary steps leading to DMSP production were up-regulated.

conclusionsThe data presented strongly suggest that corals use an algal-like pathway to generate DMSP from methionine, and are able to rapidly change expression of the corresponding genes in response to environmental stress. However, our data also indicate that DMSP is unlikely to function primarily as an osmolyte in corals, instead potentially serving as a scavenger of ROS and as a molecular sink for excess methionine produced as a consequence of proteolysis and osmolyte catabolism in corals under hypo-osmotic conditions.

Indexed as

Gene Expression ProfilingOsmotic PressureAnimalsAnthozoaGenotyping TechniquesMethioninePhotosystem II Protein ComplexSalinityStress, PhysiologicalSulfonium CompoundsdimethylpropiothetinMethioninePhotosystem II Protein ComplexSulfonium CompoundsAcropora milleporaCoralDMSP pathwayMethionineSalinity stress

Identifiers

PMID28806970
PMCPMC5557254
OpenAlexW2746813949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.