Evidence map›Paper›PMID 28806050›Full record

ArticleACS chemical biology2017

Linking High-Throughput Screens to Identify MoAs and Novel Inhibitors of Mycobacterium tuberculosis Dihydrofolate Reductase.

John P Santa Maria, Yumi Park, Lihu Yang, Nicholas Murgolo, Michael D Altman, Paul Zuck, Greg Adam, Chad Chamberlin, Peter Saradjian, Peter Dandliker and 8 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Sensing of Antibiotic-Bacteria Interactions.Antibiotics (Basel, Switzerland) · 2023
    Review
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

John P Santa MariaModeling & Informatics, Merck Research Laboratories , Boston, Massachusetts, United States.ORCID 0000-0001-9441-2521
Yumi ParkNational Institute of Allergy and Infectious Diseases , Bethesda, Maryland, United States.
Lihu YangDepartment of Chemistry, Merck Sharp & Dohme Corp. , Kenilworth, New Jersey, United States.
Nicholas MurgoloDepartment of Information & Analytics, Merck Sharp & Dohme Corp. , Kenilworth, New Jersey, United States.
Michael D AltmanModeling & Informatics, Merck Research Laboratories , Boston, Massachusetts, United States.
Paul ZuckResearch Science, Merck Sharp & Dohme Corp. , North Wales, Pennsylvania, United States.
Greg AdamDepartment of Pharmacology, Merck Sharp & Dohme Corp. , North Wales, Pennsylvania, United States.
Chad ChamberlinDepartment of Pharmacology, Merck Sharp & Dohme Corp. , Boston, Massachusetts, United States.
Peter SaradjianDepartment of Pharmacology, Merck Sharp & Dohme Corp. , Boston, Massachusetts, United States.
Peter DandlikerDepartment of Pharmacology, Merck Sharp & Dohme Corp. , Boston, Massachusetts, United States.
Helena I M BoshoffNational Institute of Allergy and Infectious Diseases , Bethesda, Maryland, United States.
Clifton E BarryNational Institute of Allergy and Infectious Diseases , Bethesda, Maryland, United States.
Charles GarlisiDepartment of Pharmacology, Merck Sharp & Dohme Corp. , Kenilworth, New Jersey, United States.
David B OlsenNeglected Tropical Disease Discovery, Merck Sharp & Dohme Corp. , West Point, Pennsylvania, United States.
Katherine YoungNeglected Tropical Disease Discovery, Merck Sharp & Dohme Corp. , West Point, Pennsylvania, United States.
Meir GlickModeling & Informatics, Merck Research Laboratories , Boston, Massachusetts, United States.
Elliott NickbargDepartment of Pharmacology, Merck Sharp & Dohme Corp. , Boston, Massachusetts, United States.
Peter S KutchukianModeling & Informatics, Merck Research Laboratories , Boston, Massachusetts, United States.ORCID 0000-0002-5684-1971
Merck & Co., Inc., Rahway, NJ, USA (United States) · USNational Institute of Allergy and Infectious Diseases · US

Funding

Development Of New Chemotherapeutics For TuberculosisZIAAI000693 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2025
$20.1M
Intramural NIH HHS Z99 AI999999Intramural NIH HHS ZIA AI000693NIAID NIH HHS HHSN272200700058CNIAID NIH HHS HHSN272201200025CNIAID NIH HHS HHSN272201200026C
6 · The paper itself

Abstract

Though phenotypic and target-based high-throughput screening approaches have been employed to discover new antibiotics, the identification of promising therapeutic candidates remains challenging. Each approach provides different information, and understanding their results can provide hypotheses for a mechanism of action (MoA) and reveal actionable chemical matter. Here, we describe a framework for identifying efficacy targets of bioactive compounds. High throughput biophysical profiling against a broad range of targets coupled with machine learning was employed to identify chemical features with predicted efficacy targets for a given phenotypic screen. We validate the approach on data from a set of 55 000 compounds in 24 historical internal antibacterial phenotypic screens and 636 bacterial targets screened in high-throughput biophysical binding assays. Models were built to reveal the relationships between phenotype, target, and chemotype, which recapitulated mechanisms for known antibacterials. We also prospectively identified novel inhibitors of dihydrofolate reductase with nanomolar antibacterial efficacy against Mycobacterium tuberculosis. Molecular modeling provided structural insight into target-ligand interactions underlying selective killing activity toward mycobacteria over human cells.

Indexed as

Antitubercular AgentsDrug Evaluation, PreclinicalFolic Acid AntagonistsHeLa CellsHigh-Throughput Screening AssaysHumansLigandsMolecular Docking SimulationMycobacterium tuberculosisTetrahydrofolate DehydrogenaseTuberculosisAntitubercular AgentsFolic Acid AntagonistsLigandsTetrahydrofolate Dehydrogenase

Identifiers

PMID28806050
PMCPMC6298432
OpenAlexW2749882303

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.