Evidence map›Paper›PMID 28805815›Full record

ArticleNature neuroscience2017

AAV-mediated direct in vivo CRISPR screen identifies functional suppressors in glioblastoma.

Ryan D Chow, Christopher D Guzman, Guangchuan Wang, Florian Schmidt, Mark W Youngblood, Lupeng Ye, Youssef Errami, Matthew B Dong, Michael A Martinez, Sensen Zhang and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature neuroscience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 153 papers.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 244 citations in OpenAlex.

  1. Review
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  9. Article
  10. The Role of CRISPR and Its Therapeutic Applications in Glioblastoma.International journal of molecular sciences · 2026
    Review
  11. Article
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  13. Review
  14. Article
  15. Article
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  18. Article
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  20. Review

93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Ryan D ChowDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.ORCID http://orcid.org/0000-0002-1872-6307
Christopher D GuzmanDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Guangchuan WangDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Florian SchmidtDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Mark W YoungbloodDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Lupeng YeDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Youssef ErramiDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Matthew B DongDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Michael A MartinezDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Sensen ZhangDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Paul RenauerDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Kaya BilguvarDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Murat GunelDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Phillip A SharpKoch Institute for Integrative Cancer Research, MIT, Cambridge, Massachusetts, USA.
Feng ZhangBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Randall J PlattDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0002-2914-7052
Sidi ChenDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.ORCID http://orcid.org/0000-0002-3819-5005
Yale University · USUniversity of Basel · CHBroad Institute · USIIT@MIT · USYale Cancer Center · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Yale SPORE in Lung Cancer (YSILC): The Biology and Personalized Treatment of Lung CancerP50CA196530 · NCI · YALE UNIVERSITY · PI KATERINA Abigail POLITI · 2015 to 2026
$31.1M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Systems analysis of phenotypic switch in control of cancer invasionU54CA209992 · NCI · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2016 to 2021
$10.1M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
REGULATION OF MRNA PROCESSINGR01GM034277 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHARP, PHILLIP A · 1985 to 2021
$8.0M
Massively-parallel functional interrogation of psychiatric geneticsR01MH110049 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2015 to 2019
$5.5M
Stress and Proliferation States Impact MicroRNA-Mediated Regulation in CancerR01CA133404 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHARP, PHILLIP A · 2008 to 2017
$4.6M
Probing Neuropsychiatric Diseases Using Targeted Epigenome and Genome EngineeringDP1MH100706 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2012 to 2016
$4.3M
NCI NIH HHS P50 CA196530NCI NIH HHS R01 CA133404NCI NIH HHS U54 CA209992NICHD NIH HHS T32 HD007149NIGMS NIH HHS R01 GM034277NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM007499NIMH NIH HHS DP1 MH100706NIMH NIH HHS R01 MH110049
6 · The paper itself

Abstract

A causative understanding of genetic factors that regulate glioblastoma pathogenesis is of central importance. Here we developed an adeno-associated virus-mediated, autochthonous genetic CRISPR screen in glioblastoma. Stereotaxic delivery of a virus library targeting genes commonly mutated in human cancers into the brains of conditional-Cas9 mice resulted in tumors that recapitulate human glioblastoma. Capture sequencing revealed diverse mutational profiles across tumors. The mutation frequencies in mice correlated with those in two independent patient cohorts. Co-mutation analysis identified co-occurring driver combinations such as B2m-Nf1, Mll3-Nf1 and Zc3h13-Rb1, which were subsequently validated using AAV minipools. Distinct from Nf1-mutant tumors, Rb1-mutant tumors are undifferentiated and aberrantly express homeobox gene clusters. The addition of Zc3h13 or Pten mutations altered the gene expression profiles of Rb1 mutants, rendering them more resistant to temozolomide. Our study provides a functional landscape of gliomagenesis suppressors in vivo.

Indexed as

CRISPR-Cas SystemsDNA Mutational AnalysisAnimalsBrain NeoplasmsCells, CulturedDacarbazineDependovirusFemaleGene Knock-In TechniquesGene Knockout TechniquesGlioblastomaHumansMaleMiceMutationSuppression, GeneticDacarbazineTemozolomide

Identifiers

PMID28805815
PMCPMC5614841
OpenAlexW2750148951

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.