Evidence map›Paper›PMID 28803781›Full record

ArticleMolecular cell2017

Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.

Kyong-Rim Kieffer-Kwon, Keisuke Nimura, Suhas S P Rao, Jianliang Xu, Seolkyoung Jung, Aleksandra Pekowska, Marei Dose, Evan Stevens, Ewy Mathe, Peng Dong and 28 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed, 1 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 1 synthesis or guideline pooled it, 232 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. MIA-Jet: Multi-scale Identification Algorithm of Chromatin Jets.bioRxiv : the preprint server for biology · 2025
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  11. Article
  12. Article
  13. Chromatin Control of EBV Infection and Latency.Current topics in microbiology and immunology · 2025
    Article
  14. Acute chromatin decompaction stiffens the nucleus as revealed by nanopillar-induced nuclear deformation in cells.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 12 institutions in 2 countries.

Kyong-Rim Kieffer-KwonLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Keisuke NimuraLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Suhas S P RaoThe Center for Genome Architecture, Baylor College of Medicine, Houston, Texas 77030, USA; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jianliang XuLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Seolkyoung JungLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Aleksandra PekowskaLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Marei DoseLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Evan StevensLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Ewy MatheLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Peng DongTranscription Imaging Consortium, Janelia Farm Research Campus, HHMI, 19700 Helix Drive, Ashburn, VA 20147, USA.
Su-Chen HuangThe Center for Genome Architecture, Baylor College of Medicine, Houston, Texas 77030, USA.
Maria Aurelia RicciICFO-Institut de Ciències Fotòniques, Barcelona Institute of Science and Technology, 08860 Castelldefels, Barcelona, Spain.
Laura BaranelloGene Regulation, Laboratory of Pathology, Center for Cancer Research, NCI, NIH, Bethesda, MD 20892, USA.
Ying ZhengGene Regulation, Laboratory of Pathology, Center for Cancer Research, NCI, NIH, Bethesda, MD 20892, USA.
Francesco Tomassoni ArdoriNeural Development Section, Mouse Cancer Genetics Program, NCI, NIH, Frederick, MD 21702, USA.
Wolfgang ReschLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Diana StavrevaLaboratory of Receptor Biology and Gene Expression, NCI, NIH, Bethesda, MD 20892, USA.
Steevenson NelsonLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Michael McAndrewDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Adriel CasellasSection on High Resolution Optical Imaging, NIBIB, NIH, Bethesda, MD 20892, USA.
Elizabeth FinnCell Biology of Genomes, NCI, NIH, Bethesda, MD 20892, USA.
Charles GregoryLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA.
Brian Glenn St HilaireThe Center for Genome Architecture, Baylor College of Medicine, Houston, Texas 77030, USA.
Steven M JohnsonDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT 84602, USA.
Wendy DuboisCenter of Cancer Research, NCI, NIH, Bethesda, MD 20892, USA.
Maria Pia CosmaCentre for Genomic Regulation, Barcelona Institute of Science and Technology, Universitat Pompeu Fabra, Institució Catalana de Recerca i Estudis Avançats, Dr. Aiguader 88, Barcelona 08003, Spain.
Eric BatchelorSystems Biology, Laboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.
David LevensGene Regulation, Laboratory of Pathology, Center for Cancer Research, NCI, NIH, Bethesda, MD 20892, USA.
Robert D PhairIntegrative Bioinformatics Inc., Mountain View, CA 94041, USA.
Tom MisteliCell Biology of Genomes, NCI, NIH, Bethesda, MD 20892, USA.
Lino TessarolloNeural Development Section, Mouse Cancer Genetics Program, NCI, NIH, Frederick, MD 21702, USA.
Gordon HagerLaboratory of Receptor Biology and Gene Expression, NCI, NIH, Bethesda, MD 20892, USA.
Melike LakadamyaliICFO-Institut de Ciències Fotòniques, Barcelona Institute of Science and Technology, 08860 Castelldefels, Barcelona, Spain.
Zhe LiuTranscription Imaging Consortium, Janelia Farm Research Campus, HHMI, 19700 Helix Drive, Ashburn, VA 20147, USA.
Monique FloerDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Hari ShroffSection on High Resolution Optical Imaging, NIBIB, NIH, Bethesda, MD 20892, USA.
Erez Lieberman AidenThe Center for Genome Architecture, Baylor College of Medicine, Houston, Texas 77030, USA. Electronic address: erez@erez.com.
Rafael CasellasLymphocyte Nuclear Biology, NIAMS, NIH, Bethesda, MD 20892, USA; Center of Cancer Research, NCI, NIH, Bethesda, MD 20892, USA. Electronic address: rafael.casellas@nih.gov.
National Institute of Arthritis and Musculoskeletal and Skin Diseases · USCenter for Cancer Research · USBaylor College of Medicine · USCancer Genetics (United States) · USInstitute of Photonic Sciences · ESMichigan State University · USNational Institute of Biomedical Imaging and Bioengineering · USBrigham Young University · USHelix (United States) · USInstitució Catalana de Recerca i Estudis Avançats · ESJanelia Research Campus · USStanford University · US

Funding

RAG and AID biologyZIAAR041148 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI O'SHEA, JOHN · 2009 to 2025
$44.8M
Section on High Resolution Optical ImagingZIAEB000074 · NIBIB · NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING · PI SHROFF, HARI · 2010 to 2022
$15.2M
Gene Targeting FacilityZICBC011265 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TESSAROLLO, LINO · 2010 to 2025
$8.9M
Molecular Biophysics Training Program at StanfordT32GM008294 · NIGMS · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 1989 to 2019
$7.4M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
GENOME WIDE MAPPING OF LOOPS USING IN SITU HI-CUM1HG009375 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI LIEBERMAN-AIDEN, EREZ · 2017 to 2021
$4.7M
Nucleome Positioning System for Spatiotemporal Genome Organization and RegulationU54DK107967 · NIDDK · JACKSON LABORATORY · PI WEI, CHIA-LIN · 2015 to 2019
$3.6M
Exploring how the genome folds through proximity ligation and sequencingDP2OD008540 · OD · BROAD INSTITUTE, INC. · PI LIEBERMAN-AIDEN, EREZ · 2011 to 2016
$3.0M
Supplement - Beyond pairwise DNA contacts: exploring higher-order genome structure using proximity ligationU01HL130010 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI LIEBERMAN-AIDEN, EREZ · 2015 to 2019
$2.3M
NHGRI NIH HHS UM1 HG009375NHLBI NIH HHS U01 HL130010NIDDK NIH HHS U54 DK107967NIGMS NIH HHS T32 GM008294NIGMS NIH HHS T32 GM008307NIH HHS DP2 OD008540
6 · The paper itself

Abstract

50 years ago, Vincent Allfrey and colleagues discovered that lymphocyte activation triggers massive acetylation of chromatin. However, the molecular mechanisms driving epigenetic accessibility are still unknown. We here show that stimulated lymphocytes decondense chromatin by three differentially regulated steps. First, chromatin is repositioned away from the nuclear periphery in response to global acetylation. Second, histone nanodomain clusters decompact into mononucleosome fibers through a mechanism that requires Myc and continual energy input. Single-molecule imaging shows that this step lowers transcription factor residence time and non-specific collisions during sampling for DNA targets. Third, chromatin interactions shift from long range to predominantly short range, and CTCF-mediated loops and contact domains double in numbers. This architectural change facilitates cognate promoter-enhancer contacts and also requires Myc and continual ATP production. Our results thus define the nature and transcriptional impact of chromatin decondensation and reveal an unexpected role for Myc in the establishment of nuclear topology in mammalian cells.

Indexed as

Cell CycleChromatin Assembly and DisassemblyLymphocyte ActivationAcetylationAcetyl Coenzyme AAdenosine TriphosphateAnimalsB-LymphocytesCell LineCell NucleusChromatinDNA MethylationEpigenesis, GeneticGenotypeHistonesImmunity, HumoralAcetyl Coenzyme AAdenosine TriphosphateChromatinHistonesMyc protein, mouseProto-Oncogene Proteins c-mycB cellschromatin remodelingcohesinCTCFHistone acetylationimmune responsemycnanoscopynuclear architecturetranscriptome amplification

Identifiers

PMID28803781
PMCPMC5854204
OpenAlexW2743019565

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.