Evidence map›Paper›PMID 28803260›Full record

ArticleEnvironmental science and pollution research international2017

Microbial volatile compounds alter the soil microbial community.

Jun Yuan, Mengli Zhao, Rong Li, Qiwei Huang, Waseem Raza, Christopher Rensing, Qirong Shen

Abstract read
PubMed Publisher
In one paragraph

Article in Environmental science and pollution research international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 74 citations in OpenAlex.

  1. Trial
  2. Article
  3. Heliyon · 2024
    Review
  4. Article
  5. Combination ofFrontiers in microbiology · 2023
    Article
  6. Review
  7. The Phlorizin-DegradingFrontiers in microbiology · 2022
    Article
  8. Biocontrol potential ofFrontiers in microbiology · 2022
    Article
  9. Review
  10. Article
  11. Article
  12. In vitro growth of3 Biotech · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jun YuanJiangsu Provincial Key Laboratory of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Organic Solid Waste Utilization, and National Engineering Research Center for Organic-based Fertilizer, Nanjing Agricultural University, Nanjing, 210095, China.
Mengli ZhaoJiangsu Provincial Key Laboratory of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Organic Solid Waste Utilization, and National Engineering Research Center for Organic-based Fertilizer, Nanjing Agricultural University, Nanjing, 210095, China.
Rong LiJiangsu Provincial Key Laboratory of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Organic Solid Waste Utilization, and National Engineering Research Center for Organic-based Fertilizer, Nanjing Agricultural University, Nanjing, 210095, China.
Qiwei HuangJiangsu Provincial Key Laboratory of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Organic Solid Waste Utilization, and National Engineering Research Center for Organic-based Fertilizer, Nanjing Agricultural University, Nanjing, 210095, China.
Waseem RazaJiangsu Provincial Key Laboratory of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Organic Solid Waste Utilization, and National Engineering Research Center for Organic-based Fertilizer, Nanjing Agricultural University, Nanjing, 210095, China.
Christopher RensingFujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and the Environment, Fujian Agriculture & Forestry University, Fuzhou, 350002, China.
Qirong ShenJiangsu Provincial Key Laboratory of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Organic Solid Waste Utilization, and National Engineering Research Center for Organic-based Fertilizer, Nanjing Agricultural University, Nanjing, 210095, China. shenqirong@njau.edu.cn.
Nanjing Agricultural University · CNInstitute of Urban Environment · CN

Funding

China Science and Technology Ministry 2015CB150506
6 · The paper itself

Abstract

Volatile organic compounds (VOCs) from soil bacteria are likely to have an important role in the interactions among soil microorganisms. However, their effects on the soil microbial community have not been extensively studied. In this study, the effect of bacterial VOCs generated by growing Bacillus amyloliquefaciens NJN-6 on modified MS medium on soil microbial community was evaluated. B. amyloliquefaciens NJN-6 was able to produce 48 volatile compounds as determined by solid-phase microextraction-GC/MS. MiSeq sequencing data showed that bacterial VOCs could alter the composition of both soil bacterial and soil fungal communities and could decrease the alpha-diversity of the soil microbial community. Taxonomic analysis revealed that bacterial VOCs significantly increased the relative abundance of Proteobacteria, Bacteroidetes, and Firmicutes. Moreover, bacterial VOCs significantly increased the relative abundance of Ascomycota. The qPCR data showed that bacterial VOCs of strain NJN-6 decreased the soil fungal biomass and increased the soil bacterial biomass. Further evaluation of the effect of bacterial VOCs on functional genes revealed that VOCs could reduce the copies of nifH, nirS, and a gene encoding nonribosomal peptide synthase, while increasing the copy number of the ammonium-oxidizing bacteria gene. The effect on gene encoding polyketide synthase was insignificant. Results from this study indicated that bacterial VOCs could influence the soil microbial community as well as functional gene abundance.

Indexed as

Soil MicrobiologyAscomycotaBacillus amyloliquefaciensBiomassSoilVolatile Organic CompoundsSoilVolatile Organic CompoundsFunctional genesMiSeq sequenceSoil microbial communityVolatile organic compounds

Identifiers

PMID28803260
OpenAlexW2743688063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.