Evidence map›Paper›PMID 28801650›Full record

ArticleScientific reports2017

Regulation of the Human Phosphatase PTPN4 by the inter-domain linker connecting the PDZ and the phosphatase domains.

Célia Caillet-Saguy, Angelo Toto, Raphael Guerois, Pierre Maisonneuve, Eva di Silvio, Kristi Sawyer, Stefano Gianni, Nicolas Wolff

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. HGG advances · 2021
    Article
  5. Article
  6. Automatic Bayesian Weighting for SAXS Data.Frontiers in molecular biosciences · 2021
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Célia Caillet-SaguyInstitut Pasteur - CNRS, Unité de Résonance Magnétique Nucléaire des Biomolécules - UMR 3528, Département de Biologie Structurale et Chimie, Institut Pasteur, Paris, F-75724, France. celia.caillet-saguy@pasteur.fr.
Angelo TotoIstituto Pasteur - Fondazione Cenci Bolognetti and Istituto di Biologia e Patologia Molecolari del CNR, Dipartimento di Scienze Biochimiche "A. Rossi Fanelli", Sapienza University of Rome, Rome, 00185, Italy.
Raphael GueroisInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette cedex, 91198, France.
Pierre MaisonneuveInstitut Pasteur - CNRS, Unité de Résonance Magnétique Nucléaire des Biomolécules - UMR 3528, Département de Biologie Structurale et Chimie, Institut Pasteur, Paris, F-75724, France.ORCID 0000-0001-8292-5741
Eva di SilvioIstituto Pasteur - Fondazione Cenci Bolognetti and Istituto di Biologia e Patologia Molecolari del CNR, Dipartimento di Scienze Biochimiche "A. Rossi Fanelli", Sapienza University of Rome, Rome, 00185, Italy.
Kristi SawyerInstitut Pasteur - CNRS, Unité de Résonance Magnétique Nucléaire des Biomolécules - UMR 3528, Département de Biologie Structurale et Chimie, Institut Pasteur, Paris, F-75724, France.
Stefano GianniIstituto Pasteur - Fondazione Cenci Bolognetti and Istituto di Biologia e Patologia Molecolari del CNR, Dipartimento di Scienze Biochimiche "A. Rossi Fanelli", Sapienza University of Rome, Rome, 00185, Italy. stefano.gianni@uniroma1.it.
Nicolas WolffInstitut Pasteur - CNRS, Unité de Résonance Magnétique Nucléaire des Biomolécules - UMR 3528, Département de Biologie Structurale et Chimie, Institut Pasteur, Paris, F-75724, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human protein tyrosine phosphatase non-receptor type 4 (PTPN4) has been shown to prevent cell death. The active form of human PTPN4 consists of two globular domains, a PDZ (PSD-95/Dlg/ZO-1) domain and a phosphatase domain, tethered by a flexible linker. Targeting its PDZ domain abrogates this protection and triggers apoptosis. We previously demonstrated that the PDZ domain inhibits the phosphatase activity of PTPN4 and that the mere binding of a PDZ ligand is sufficient to release the catalytic inhibition. We demonstrate here that the linker connecting the PDZ domain and the phosphatase domain is involved in the regulation of the phosphatase activity in both PDZ-related inhibition and PDZ ligand-related activation events. We combined bioinformatics and kinetic studies to decipher the role of the linker in the PTPN4 activity. By comparing orthologous sequences, we identified a conserved patch of hydrophobic residues in the linker. We showed that mutations in this patch affect the regulation of the PTPN4 bidomain indicating that the PDZ-PDZ ligand regulation of PTPN4 is a linker-mediated mechanism. However, the mutations do not alter the binding of the PDZ ligand. This study strengthens the notion that inter-domain linker can be of functional importance in enzyme regulation of large multi-domain proteins.

Indexed as

MutationAllosteric RegulationAmino Acid SequenceBinding SitesBiocatalysisHumansKineticsLigandsPDZ DomainsPhosphoric Monoester HydrolasesProtein BindingProtein Tyrosine Phosphatase, Non-Receptor Type 4ProteolysisSequence Homology, Amino AcidLigandsPhosphoric Monoester HydrolasesProtein Tyrosine Phosphatase, Non-Receptor Type 4PTPN4 protein, human

Identifiers

PMID28801650
PMCPMC5554198

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.