Evidence map›Paper›PMID 28801648›Full record

ArticleScientific reports2017

An effective combination of whole-exome sequencing and runs of homozygosity for the diagnosis of primary ciliary dyskinesia in consanguineous families.

Ting Guo, Zhi-Ping Tan, Hua-Mei Chen, Dong-Yuan Zheng, Lv Liu, Xin-Gang Huang, Ping Chen, Hong Luo, Yi-Feng Yang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

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  18. Cyclin-dependent kinases and rare developmental disorders.Orphanet journal of rare diseases · 2020
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  19. Review
  20. Atypical cyclins: the extended family portrait.Cellular and molecular life sciences : CMLS · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ting GuoDepartment of Respiratory Medicine, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China.
Zhi-Ping TanCentral South University Center for Clinical Gene Diagnosis and Treatment, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China.
Hua-Mei ChenDepartment of Respiratory Medicine, Chang Sha Central Hospital, Changsha, Hunan, 410011, China.
Dong-Yuan ZhengDepartment of Respiratory Medicine, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China.
Lv LiuDepartment of Respiratory Medicine, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China.
Xin-Gang HuangDepartment of Respiratory Medicine, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China.
Ping ChenDepartment of Respiratory Medicine, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China.
Hong LuoDepartment of Respiratory Medicine, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China. Luohong1003@163.com.
Yi-Feng YangCentral South University Center for Clinical Gene Diagnosis and Treatment, the Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, China. yyf627@163.com.
Central South University · CNSecond Xiangya Hospital of Central South University · CNChangsha Central Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Primary ciliary dyskinesia (PCD) is clinically characterized by neonatal respiratory distress, chronic sinusitis, bronchiectasis and infertility, and situs inversus in 50% of the patients. PCD is a result of mutations in genes encoding proteins involved in ciliary function, and is primarily inherited in an autosomal recessive fashion. Diagnosis of PCD is often a challenging task due to its high clinical and genetic heterogeneities. In the present study, we attempted to use whole-exome sequencing (WES) combined with runs of homozygosity (ROH) approaches to identify the genetic defects in four Chinese consanguineous families with clinical PCD. We successfully identified three recently acknowledged PCD genes: DYX1C1, CCNO and ARMC4, and one well-characterized PCD gene, DNAI1. Our study provides compelling evidence that WES in combination with ROH analysis is an efficient diagnostic tool for identifying genetic causes of PCD in consanguineous families. Furthermore, our work expands the genetic mutation spectrum in PCD, and provides the additional tools to better serve the counseling of the families with PCD.

Indexed as

HomozygoteAdultArmadillo Domain ProteinsAsian PeopleAxonemal DyneinsCiliary Motility DisordersCytoskeletal ProteinsDNA GlycosylasesExome SequencingFamily HealthFemaleHumansMaleMiddle AgedMolecular Diagnostic TechniquesNerve Tissue ProteinsArmadillo Domain ProteinsAxonemal DyneinsCCNO protein, humanCytoskeletal ProteinsDNAAF4 protein, humanDNA GlycosylasesDNAI1 protein, humanNerve Tissue ProteinsNuclear ProteinsODAD2 protein, human

Identifiers

PMID28801648
PMCPMC5554225
OpenAlexW2743210061

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.