Evidence map›Paper›PMID 28801593›Full record

ArticleScientific reports2017

Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.).

Yanshi Xia, Ronghua Li, Guihua Bai, Kadambot H M Siddique, Rajeev K Varshney, Michael Baum, Guijun Yan, Peiguo Guo

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  11. Knockdown ofFrontiers in plant science · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yanshi XiaInternational Crop Research Center for Stress Resistance/College of Life Sciences, Guangzhou University, Guangzhou, 510006, China.
Ronghua LiInternational Crop Research Center for Stress Resistance/College of Life Sciences, Guangzhou University, Guangzhou, 510006, China.
Guihua BaiUSDA-ARS Hard Winter Wheat Genetics Research Unit, 4008 Throckmorton Hall, Manhattan, KS, 66506, USA.ORCID 0000-0002-1194-319X
Kadambot H M SiddiqueThe UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia.
Rajeev K VarshneyInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502324, Telangana State, India.
Michael BaumInternational Center for Agricultural Research in the Dry Areas (ICARDA), PO.Box 114/5055, Beirut, Lebanon.ORCID 0000-0002-8248-6088
Guijun YanThe UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia.
Peiguo GuoInternational Crop Research Center for Stress Resistance/College of Life Sciences, Guangzhou University, Guangzhou, 510006, China. guopg@gzhu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Delta-1-pyrroline-5-carboxylate synthase gene1 (P5CS1) is the key gene involved in the biosynthesis of proline and is significantly induced by drought stress. The exploration of genetic variation in HvP5CS1 may facilitate a better understanding of the mechanism of drought adaptation in barley. In the current study, 41 polymorphisms including 16 single nucleotide polymorphisms (SNPs) and 25 insertions/deletions (indels) were detected in HvP5CS1 among 287 barley (Hordeum vulgare L.) accessions collected worldwide, with 13 distinct haplotypes identified in the barley collection. Five polymorphisms in HvP5CS1 were significantly (P < 0.001) associated with drought tolerance related traits in barley. The phenotypic variation of a given trait explained by each associated polymorphism ranged from 4.43% to 9.81%. Two sequence variations that were significantly (P < 0.0001) associated with grain yield had marginally significant positive Tajima's D values in the sliding window, so they might have been selected for environmental adaptation. Meanwhile, two haplotypes HvP5CS1_H1 and HvP5CS1_H4, which contained desired alleles of the two variations mentioned above, were significantly (P < 0.001) associated with drought tolerance related traits, and explained 5.00~11.89% of the phenotypic variations. These variations associated with drought tolerance related traits can be used as potential markers for improving drought tolerance in barley.

Indexed as

DroughtsPolymorphism, Single NucleotideAdaptation, PhysiologicalGene FrequencyGenotypeGlutamate-5-Semialdehyde DehydrogenaseHaplotypesHordeumPhosphotransferases (Alcohol Group Acceptor)PhylogenyPlant ProteinsQuantitative Trait LociGlutamate-5-Semialdehyde DehydrogenasePhosphotransferases (Alcohol Group Acceptor)Plant Proteins

Identifiers

PMID28801593
PMCPMC5554244

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.