Evidence map›Paper›PMID 28800764›Full record

ArticleJournal of biomedical science2017

Lrp, a global regulator, regulates the virulence of Vibrio vulnificus.

Yu-Chi Ho, Feng-Ru Hung, Chao-Hui Weng, Wei-Ting Li, Tzu-Hung Chuang, Tsung-Lin Liu, Ching-Yuan Lin, Chien-Jung Lo, Chun-Liang Chen, Jen-Wei Chen and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Targeting Virulence Genes Expression inInternational journal of molecular sciences · 2022
    Article
  5. Review
  6. Article
  7. A MARTX ToxinmBio · 2020
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Yu-Chi HoDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan.
Feng-Ru HungDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan.
Chao-Hui WengDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan.
Wei-Ting LiDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan.
Tzu-Hung ChuangInstitute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, 70101, Taiwan.
Tsung-Lin LiuInstitute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, 70101, Taiwan.
Ching-Yuan LinDepartment of Physics and Graduate Institute of Biophysics, National Central University, Taoyuan, 32001, Taiwan.
Chien-Jung LoDepartment of Physics and Graduate Institute of Biophysics, National Central University, Taoyuan, 32001, Taiwan.
Chun-Liang ChenDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan.
Jen-Wei ChenDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan.
Masayuki HashimotoCenter of Infectious Disease and Signal Transduction, National Cheng Kung University, Tainan, 70101, Taiwan.
Lien-I HorDepartment of Microbiology and Immunology, College of Medicine, Tainan, 70101, Taiwan. h061453@mail.ncku.edu.tw.ORCID http://orcid.org/0000-0002-8252-8380
National Tainan Institute of Nursing · TWNational Cheng Kung University · TWNational Central University · TWNational University of Tainan · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAn attenuated mutant (designated NY303) of Vibrio vulnificus, which causes serious wound infection and septicemia in humans, was isolated fortuitously from a clinical strain YJ016. This mutant was defective in cytotoxicity, migration on soft agar and virulence in the mouse. The purpose of this study was to map the mutation in this attenuated mutant and further explore how the gene thus identified is involved in virulence.

methodsThe whole genome sequence of mutant NY303 determined by next-generation sequencing was compared with that of strain YJ016 to map the mutations. By isolating and characterizing the specific gene-knockout mutants, the gene associated with the phenotype of mutant NY303 was identified. This gene encodes a global regulator, Lrp. A mutant, YH01, deficient in Lrp was isolated and examined in vitro, in vivo and ex vivo to find the affected virulence mechanisms. The target genes of Lrp were further identified by comparing the transcriptomes, which were determined by RNA-seq, of strain YJ016 and mutant YH01. The promoters bound by Lrp were identified by genome footprinting-sequencing, and those related with virulence were further examined by electrophoretic mobility shift assay.

resultsA mutation in lrp was shown to be associated with the reduced cytotoxicity, chemotaxis and virulence of mutant NY303. Mutant YH01 exhibited a phenotype resembling that of mutant NY303, and was defective in colonization in the mouse and growth in mouse serum, but not the antiphagocytosis ability. 596 and 95 genes were down- and up-regulated, respectively, in mutant YH01. Many of the genes involved in secretion of the MARTX cytotoxin, chemotaxis and iron-acquisition were down-regulated in mutant YH01. The lrp gene, which was shown to be negatively autoregulated, and 7 down-regulated virulence-associated genes were bound by Lrp in their promoters. A 14-bp consensus sequence, mkCrTTkwAyTsTG, putatively recognized by Lrp was identified in the promoters of these genes.

conclusionsLrp is a global regulator involved in regulation of cytotoxicity, chemotaxis and iron-acquisition in V. vulnificus. Down-regulation of many of the genes associated with these properties may be responsible, at least partly, for loss of virulence in mutant NY303.

Indexed as

Down-RegulationMutationAnimalsBacterial ProteinsLeucine-Responsive Regulatory ProteinMiceMice, Inbred C3HRodent DiseasesVibrio InfectionsVibrio vulnificusVirulenceBacterial ProteinsLeucine-Responsive Regulatory ProteinChemotaxisCytotoxicityGene regulationIron-acquisitionLrpSpontaneous attenuated mutantVibrio vulnificusVirulence

Identifiers

PMID28800764
PMCPMC5554404
OpenAlexW2743551914

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.