Evidence map›Paper›PMID 28800244›Full record

ArticleAssay and drug development technologies

Exploiting Analysis of Heterogeneity to Increase the Information Content Extracted from Fluorescence Micrographs of Transgenic Zebrafish Embryos.

Tongying Shun, Albert H Gough, Subramaniam Sanker, Neil A Hukriede, Andreas Vogt

Abstract read
In one paragraph

Article in Assay and drug development technologies. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Overcoming stochastic variations in culture variables to quantify and compare growth curve data.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tongying Shun1 University of Pittsburgh Drug Discovery Institute , Pittsburgh, Pennsylvania.
Albert H Gough1 University of Pittsburgh Drug Discovery Institute , Pittsburgh, Pennsylvania.
Subramaniam Sanker3 Department of Developmental Biology, University of Pittsburgh Drug Discovery Institute , Pittsburgh, Pennsylvania.
Neil A Hukriede3 Department of Developmental Biology, University of Pittsburgh Drug Discovery Institute , Pittsburgh, Pennsylvania.
Andreas Vogt1 University of Pittsburgh Drug Discovery Institute , Pittsburgh, Pennsylvania.

Funding

Regulation of Renal Progenitor Cells in Regenerating KidneysR01DK069403 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUKRIEDE, NEIL A · 2006 to 2020
$4.8M
Utilizing Small Molecule Screens to Delineate Embryonic Signaling MechanismsR01HD053287 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUKRIEDE, NEIL A, TSANG, MICHAEL WAIKOK · 2007 to 2016
$3.1M
High content in vivo screening for acute kidney injury ameliorating drugsR01DK112652 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUKRIEDE, NEIL A, VOGT, ANDREAS · 2017 to 2019
$1.1M
NICHD NIH HHS R01 HD053287NIDDK NIH HHS R01 DK069403NIDDK NIH HHS R01 DK112652
6 · The paper itself

Abstract

Zebrafish embryos are a near-ideal animal model for drug discovery because of their high genetic and physiological similarity to mammals, small size, high fecundity, and optical transparency. The latter properties make zebrafish at larval stages especially suited for high-content analysis and high throughput screening (HTS). However, inherent biological complexity and the inability to screen multiple specimens in a single well present a challenge for HTS because limiting replicates and high variability often prevent assays from reaching the stringent performance criteria demanded of large-scale screening assays. In this report, we present methodology that overcomes these obstacles. We used our previously developed Tg(lhx1a:EGFP)

Indexed as

Animals, Genetically ModifiedComputational BiologyFluorescenceGenetic HeterogeneityHigh-Throughput Screening AssaysAnimalsCells, CulturedZebrafishassay developmentheterogeneityhigh-content screeningzebrafish

Identifiers

PMID28800244
PMCPMC5576098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.