Evidence map›Paper›PMID 28800212›Full record

ArticleHLA2017

ABO blood group phenotype frequency estimation using molecular phenotyping in rhesus and cynomolgus macaques.

S Kanthaswamy, J Ng, R F Oldt, L Valdivia, P Houghton, D G Smith

Abstract read
In one paragraph

Article in HLA, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

S KanthaswamyCalifornia National Primate Research Center, University of California, Davis, California.ORCID 0000-0003-4503-6886
J NgSchool of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, Arizona.
R F OldtSchool of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, Arizona.
L ValdiviaSchool of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, Arizona.
P HoughtonPrimate Products Inc., Miami, Florida.
D G SmithCalifornia National Primate Research Center, University of California, Davis, California.
Maricopa Community Colleges - Glendale Community College · USPrimate Conservation · USUniversity of California, Davis · US

Funding

GENETIC MANAGEMENT OF MECAQUES BY DNA RFLP ANALYSISR24RR005090 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI SMITH, DAVID GLENN · 1988 to 2011
$3.7M
Development, Management and Use of a SNP Map for Rhesus MacaqueR24RR025871 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SMITH, DAVID GLENN · 2009 to 2011
$1.6M
NCRR NIH HHS R24 RR005090NCRR NIH HHS R24 RR025871
6 · The paper itself

Abstract

A much larger sample (N = 2369) was used to evaluate a previously reported distribution of the A, AB and B blood group phenotypes in rhesus and cynomolgus macaques from six different regional populations. These samples, acquired from 15 different breeding and research facilities in the United States, were analyzed using a real-time quantitative polymerase chain reaction (qPCR) assay that targets single nucleotide polymorphisms (SNPs) responsible for the macaque A, B and AB phenotypes. The frequency distributions of blood group phenotypes of the two species differ significantly from each other and significant regional differentiation within the geographic ranges of each species was also observed. The B blood group phenotype was prevalent in rhesus macaques, especially those from India, while the frequencies of the A, B and AB phenotypes varied significantly among cynomolgus macaques from different geographic regions. The Mauritian cynomolgus macaques, despite having originated in Indonesia, showed significant (P ≪ .01) divergence from the Indonesian animals at the ABO blood group locus. Most Mauritian animals belonged to the B blood group while the Indonesian animals were mostly A. The close similarity in blood group frequency distributions between the Chinese rhesus and Indochinese cynomolgus macaques demonstrates that the introgression between these two species extends beyond the zone of intergradation in Indochina. This study underscores the importance of ABO blood group phenotyping of the domestic supply of macaques and their biospecimens.

Indexed as

ABO Blood-Group SystemAnimalsBlood Grouping and CrossmatchingGeographyMacaca fascicularisMacaca mulattaPhenotypeSpecies SpecificityABO Blood-Group SystemABO blood testingcolony genetic managementcynomolgus or long-tailed macaquesmolecular diagnosticsrhesus macaques

Identifiers

PMID28800212
PMCPMC5629111
OpenAlexW2743939564

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.