Evidence map›Paper›PMID 28800155›Full record

ArticleCurrent protocols in microbiology2017

Epigenetic Analysis of SV40 Minichromosomes.

Lata Balakrishnan, Barry Milavetz

Abstract read
In one paragraph

Article in Current protocols in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Mapping Nucleosome Location Using FS-Seq.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Lata BalakrishnanDepartment of Biology, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana.
Barry MilavetzDepartment of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks, North Dakota.
Indiana University – Purdue University Indianapolis · USUniversity of North Dakota · US

Funding

Regulating Pathways and Fidelity of DNA Replication and Repair by AcetylationR00GM098328 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI BALAKRISHNAN, LATA · 2014 to 2016
$746k
EPIGENETIC REGULATION OF THE INITIATION OF AN SV40 LYTIC INFECTIONR15AI094441 · NIAID · UNIVERSITY OF NORTH DAKOTA · PI MILAVETZ, BARRY IRA · 2012 to 2012
$414k
Regulating Pathways and Fidelity of DNA Replication and Repair by AcetylationK99GM098328 · NIGMS · UNIVERSITY OF ROCHESTER · PI BALAKRISHNAN, LATA · 2012 to 2013
$180k
SV40 ENCAPSIDATION AS A REGULATOR OF CHROMATIN STRUCTURER03AI127969 · NIAID · UNIVERSITY OF NORTH DAKOTA · PI MILAVETZ, BARRY IRA · 2017 to 2018
$139k
NIAID NIH HHS R03 AI127969NIAID NIH HHS R15 AI094441NIGMS NIH HHS K99 GM098328NIGMS NIH HHS R00 GM098328
6 · The paper itself

Abstract

Simian virus 40 (SV40) is one of the best-characterized members of the polyomavirus family of small DNA tumor viruses. It has a small genome of 5243 bp and utilizes cellular proteins for its molecular biology, with the exception of the T-antigen protein, which is coded by the virus and is involved in regulating transcription and directing replication. Importantly, SV40 exists as chromatin in both the virus particle and intracellular minichromosomes. These facts, combined with high yields of virus and minichromosomes following infection and ease of manipulation, have made SV40 an extremely useful model to study all aspects of eukaryotic molecular biology. This unit describes procedures for working with SV40 and preparing SV40 chromatin from infected cells and virus particles, as well as procedures for using SV40 chromatin to study epigenetic regulation. © 2017 by John Wiley & Sons, Inc.

Indexed as

AnimalsEpigenesis, GeneticEpigenomicsHumansPolyomavirus InfectionsSimian virus 40Tumor Virus InfectionsVirus Cultivationchromatin immunoprecipitationminichromosomesnext-generation sequencingSimian virus 40 (SV40)viral epigenetics

Identifiers

PMID28800155
PMCPMC5672954
OpenAlexW2747529882

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.