ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2017
Detecting the QTL-allele system conferring flowering date in a nested association mapping population of soybean using a novel procedure.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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32 citing papers in PubMed, 56 citations in OpenAlex.
- Constitution and function of intergenic genome regions in cultivated versus annual wild soybean in China.Journal of integrative plant biology · 2026Article
- Decades' progress and prospects on maize functional genomics and molecular breeding.Science China. Life sciences · 2025Review
- Characterization of shade tolerance gene network in soybean revealed by forward integrated reverse genetic studies.Horticulture research · 2025Article
- Identification of quantitative trait loci for lodging and related agronomic traits in soybean (Glycine max [L.] Merr.).BMC genomics · 2024Article
- Integrating RTM-GWAS and meta‑QTL data revealed genomic regions and candidate genes associated with the first fruit branch node and its height in upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Efficient identification of QTL for agronomic traits in foxtail millet (Setaria italica) using RTM- and MLM-GWAS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Identification of QTL-allele systems of seed size and oil content for simultaneous genomic improvement in Northeast China soybeans.Frontiers in plant science · 2024Article
- Gene-allele system of shade tolerance in southern China soybean germplasm revealed by genome-wide association study using gene-allele sequence as markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Review
- An Improved Genome-Wide Association Procedure Explores Gene-Allele Constitutions and Evolutionary Drives of Growth Period Traits in the Global Soybean Germplasm Population.International journal of molecular sciences · 2023Article
- Identification of Novel Genomic Regions for Bacterial Leaf Pustule (BLP) Resistance in Soybean (International journal of molecular sciences · 2022Article
- Germplasm Sources, Genetic Richness, and Population Differentiation of Modern Chinese Soybean Cultivars Based on Pedigree Integrated With Genomic-Marker Analysis.Frontiers in plant science · 2022Article
- Development of an Australian Bread Wheat Nested Association Mapping Population, a New Genetic Diversity Resource for Breeding under Dry and Hot Climates.International journal of molecular sciences · 2021Article
- Evolutionary QTL-allele changes in main stem node number among geographic and seasonal subpopulations of Chinese cultivated soybeans.Molecular genetics and genomics : MGG · 2021Article
- From Genetic Maps to QTL Cloning: An Overview for Durum Wheat.Plants (Basel, Switzerland) · 2021Review
- Identifying Wild Versus Cultivated Gene-Alleles Conferring Seed Coat Color and Days to Flowering in Soybean.International journal of molecular sciences · 2021Article
- Identification and Validation of Major QTLs, Epistatic Interactions, and Candidate Genes for Soybean Seed Shape and Weight Using Two Related RIL Populations.Frontiers in genetics · 2021Article
- An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton.BMC plant biology · 2020Article
- Genetic dynamics of earlier maturity group emergence in south-to-north extension of Northeast China soybeans.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genome-Wide Association Analyses Reveal Genomic Regions Controlling Canopy Wilting in Soybean.G3 (Bethesda, Md.) · 2020Article
- Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication.Nature genetics · 2020Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageThe RTM-GWAS was chosen among five procedures to identify DTF QTL-allele constitution in a soybean NAM population; 139 QTLs with 496 alleles accounting for 81.7% of phenotypic variance were detected. Flowering date (days to flowering, DTF) is an ecological trait in soybean, closely related to its ability to adapt to areas. A nested association mapping (NAM) population consisting of four RIL populations (LM, ZM, MT and MW with M8206 as their common parent) was established and tested for their DTF under five environments. Using restriction-site-associated DNA sequencing the population was genotyped with SNP markers. The restricted two-stage multi-locus (RTM) genome-wide association study (GWAS) (RTM-GWAS) with SNP linkage disequilibrium block (SNPLDB) as multi-allele genomic markers performed the best among the five mapping procedures with software publicly available. It identified the greatest number of quantitative trait loci (QTLs) (139) and alleles (496) on 20 chromosomes covering almost all of the QTLs detected by four other mapping procedures. The RTM-GWAS provided the detected QTLs with highest genetic contribution but without overflowing and missing heritability problems (81.7% genetic contribution vs. heritability of 97.6%), while SNPLDB markers matched the NAM population property of multiple alleles per locus. The 139 QTLs with 496 alleles were organized into a QTL-allele matrix, showing the corresponding DTF genetic architecture of the five parents and the NAM population. All lines and parents comprised both positive and negative alleles, implying a great potential of recombination for early and late DTF improvement. From the detected QTL-allele system, 126 candidate genes were annotated and χ
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