Evidence map›Paper›PMID 28798746›Full record

ArticleFrontiers in immunology2017

Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells.

Natasja Wulff Pedersen, P Anoop Chandran, Yu Qian, Jonathan Rebhahn, Nadia Viborg Petersen, Mathilde Dalsgaard Hoff, Scott White, Alexandra J Lee, Rick Stanton, Charlotte Halgreen and 6 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Natasja Wulff PedersenDivision of Immunology and Vaccinology, Veterinary Institute, Technical University of Denmark, Copenhagen, Denmark.
P Anoop ChandranDepartment of Immunology, Interfaculty Institute for Cell Biology, University of Tuebingen, Tuebingen, Germany.
Yu QianDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA, United States.
Jonathan RebhahnDavid H. Smith Center for Vaccine Biology and Immunology, University of Rochester Medical Center, Rochester, NY, United States.
Nadia Viborg PetersenDivision of Immunology and Vaccinology, Veterinary Institute, Technical University of Denmark, Copenhagen, Denmark.
Mathilde Dalsgaard HoffDivision of Immunology and Vaccinology, Veterinary Institute, Technical University of Denmark, Copenhagen, Denmark.
Scott WhiteDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, United States.
Alexandra J LeeDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA, United States.
Rick StantonHuman Longevity Inc., San Diego, CA, United States.
Charlotte HalgreenImmudex Aps, Copenhagen, Denmark.
Kivin JakobsenImmudex Aps, Copenhagen, Denmark.
Tim MosmannDavid H. Smith Center for Vaccine Biology and Immunology, University of Rochester Medical Center, Rochester, NY, United States.
Cécile GouttefangeasDepartment of Immunology, Interfaculty Institute for Cell Biology, University of Tuebingen, Tuebingen, Germany.
Cliburn ChanDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, United States.
Richard H ScheuermannDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA, United States.
Sine Reker HadrupDivision of Immunology and Vaccinology, Veterinary Institute, Technical University of Denmark, Copenhagen, Denmark.

Funding

Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Bjoern Peters · 2015 to 2026
$36.7M
The Statistical and Computational Analysis of Flow Cytometry DataR01EB008400 · NIBIB · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GOTTARDO, RAPHAEL · 2008 to 2015
$2.9M
NIAID NIH HHS HHSN272201200005CNIAID NIH HHS U19 AI118626NIBIB NIH HHS R01 EB008400
6 · The paper itself

Abstract

Manual analysis of flow cytometry data and subjective gate-border decisions taken by individuals continue to be a source of variation in the assessment of antigen-specific T cells when comparing data across laboratories, and also over time in individual labs. Therefore, strategies to provide automated analysis of major histocompatibility complex (MHC) multimer-binding T cells represent an attractive solution to decrease subjectivity and technical variation. The challenge of using an automated analysis approach is that MHC multimer-binding T cell populations are often rare and therefore difficult to detect. We used a highly heterogeneous dataset from a recent MHC multimer proficiency panel to assess if MHC multimer-binding CD8

Indexed as

antigen-specific T cellsautomated gatingcomputational analysisflow cytometrymajor histocompatibility complex dextramersmajor histocompatibility complex multimers

Identifiers

PMID28798746
PMCPMC5526901

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.