Evidence map›Paper›PMID 28797243›Full record

ArticleBMC evolutionary biology2017

Polymorphism and structure of style-specific arabinogalactan proteins as determinants of pollen tube growth in Nicotiana.

Andrzej K Noyszewski, Yi-Cheng Liu, Koichiro Tamura, Alan G Smith

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Spatial and Temporal Distribution of Arabinogalactan Proteins duringInternational journal of molecular sciences · 2021
    Article
  6. Article
  7. Plants (Basel, Switzerland) · 2019
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Andrzej K NoyszewskiDepartment of Horticultural Science, University of Minnesota, 356 Alderman Hall 1970 Folwell Av., St. Paul, MN, 55108, USA. anoyszew@umn.edu.
Yi-Cheng LiuDepartment of Horticultural Science, University of Minnesota, 356 Alderman Hall 1970 Folwell Av., St. Paul, MN, 55108, USA.
Koichiro TamuraDepartment of Biological Sciences, Tokyo Metropolitan University, 1-1 Minami-ohsawa, Hachioji, Tokyo, 192-0397, Japan.
Alan G SmithDepartment of Horticultural Science, University of Minnesota, 356 Alderman Hall 1970 Folwell Av., St. Paul, MN, 55108, USA.
University of Minnesota · USArog Pharmaceuticals (United States) · USTokyo Metropolitan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPollen tube growth and fertilization are key processes in angiosperm sexual reproduction. The transmitting tract (TT) of Nicotiana tabacum controls pollen tube growth in part by secreting pistil extensin-like protein III (PELPIII), transmitting-tract-specific (TTS) protein and 120 kDa glycoprotein (120 K) into the stylar extracellular matrix. The three arabinogalactan proteins (AGP) are referred to as stylar AGPs and are the focus of this research. The transmitting tract regulates pollen tube growth, promoting fertilization or rejecting pollen tubes.

resultsThe N-terminal domain (NTD) of the stylar AGPs is proline rich and polymorphic among Nicotiana spp. The NTD was predicted to be mainly an intrinsically disordered region (IDR), making it a candidate for protein-protein interactions. The NTD is also the location for the majority of the predicted O-glycosylation sites that were variable among Nicotiana spp. The C-terminal domain (CTD) contains an Ole e 1-like domain, that was predicted to form beta-sheets that are similar in position and length among Nicotiana spp. and among stylar AGPs. The TTS protein had the greatest amino acid and predicted O-glycosylation conservation among Nicotiana spp. relative to the PELPIII and 120 K. The PELPIII, TTS and 120 K genes undergo negative selection, with d

conclusionsFurther studies of the NtPRP gene are necessary to elucidate its biological role. Due to its high similarity to the TTS gene, NtPRP may be involved in pollen tube guidance and growth. In contrast to TTS, both PELPIII and 120 K genes are more diverse indicating a possible role in speciation or mating preference of Nicotiana spp. We hypothesize that the stylar AGPs and NtPRP share a common origin from a single gene that duplicated and diversified into four distinct genes involved in pollen-style interactions.

Indexed as

Polymorphism, GeneticAmino Acid SequenceExonsGenes, PlantGenotypeGlycoproteinsGlycosylationINDEL MutationIntronsModels, GeneticMucoproteinsNicotianaPlant ProteinsPollen TubeSelection, GeneticSequence Alignmentarabinogalactan proteinsGlycoproteinsMucoproteinsPlant ProteinsIntrinsically disordered proteinsOle e 1-like domainPollen-style interactionsPositive selection

Identifiers

PMID28797243
PMCPMC5553597
OpenAlexW2744327448

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.