Evidence map›Paper›PMID 28797234›Full record

ArticleBMC genomics2017

Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathway.

Shangguo Feng, Kaili Jiao, Hong Guo, Mengyi Jiang, Juan Hao, Huizhong Wang, Chenjia Shen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Refined polysaccharide fromFrontiers in immunology · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. First Succinylome Profiling ofFrontiers in cellular and infection microbiology · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shangguo FengCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Kaili JiaoCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Hong GuoCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Mengyi JiangCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Juan HaoCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Huizhong WangCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China. whz62@163.com.
Chenjia ShenCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China. shencj@hznu.edu.cn.
Hangzhou Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLysine succinylation is a ubiquitous and important protein post-translational modification in various eukaryotic and prokaryotic cells. However, its functions in Dendrobium officinale, an important traditional Chinese orchid herb with high polysaccharide contents, are largely unknown.

resultsIn our study, LC-MS/MS was used to identify the peptides that were enriched by immune-purification with a high-efficiency succinyl-lysine antibody. In total, 314 lysine succinylation sites in 207 proteins were identified. A gene ontology analysis showed that these proteins are associated with a wide range of cellular functions, from metabolic processes to stimuli responses. Moreover, two types of conserved succinylation motifs, '***K

conclusionsOur results provide the first comprehensive view of the succinylome of D. officinale and may accelerate future biological investigations of succinylation in the synthesis of polysaccharides, which are major active ingredients.

Indexed as

Protein Processing, Post-TranslationalAmino Acid MotifsBinding SitesDendrobiumGlycolysisIntracellular SpaceLysineMolecular Sequence AnnotationPlant ProteinsProtein Interaction MappingProtein TransportSequence AlignmentLysinePlant ProteinsD. officinaleGlycolysis pathwayLC-MS/MSMetabolic pathwaySuccinylation

Identifiers

PMID28797234
PMCPMC5553593
OpenAlexW2743188269

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.