Evidence map›Paper›PMID 28796780›Full record

ArticlePloS one2017

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

Olusegun Oshota, Max Conway, Maria Fookes, Fernanda Schreiber, Roy R Chaudhuri, Lu Yu, Fiona J E Morgan, Simon Clare, Jyoti Choudhary, Nicholas R Thomson and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Olusegun OshotaDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Max ConwayComputer Laboratory, University of Cambridge, JJ Thomson Avenue, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0001-8913-0909
Maria FookesWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Fernanda SchreiberWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Roy R ChaudhuriDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Lu YuWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Fiona J E MorganDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0003-0583-7996
Simon ClareWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Jyoti ChoudharyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Nicholas R ThomsonWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Pietro LioComputer Laboratory, University of Cambridge, JJ Thomson Avenue, Cambridge, United Kingdom.
Duncan J MaskellDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0002-5065-653X
Pietro MastroeniDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0003-3838-4962
Andrew J GrantDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0001-9746-2989
University of Cambridge · GBWellcome Sanger Institute · GB

Funding

Medical Research Council G0801161Medical Research Council G1100102
6 · The paper itself

Abstract

Salmonella enterica are a threat to public health. Current vaccines are not fully effective. The ability to grow in infected tissues within phagocytes is required for S. enterica virulence in systemic disease. As the infection progresses the bacteria are exposed to a complex host immune response. Consequently, in order to continue growing in the tissues, S. enterica requires the coordinated regulation of fitness genes. Bacterial gene regulation has so far been investigated largely using exposure to artificial environmental conditions or to in vitro cultured cells, and little information is available on how S. enterica adapts in vivo to sustain cell division and survival. We have studied the transcriptome, proteome and metabolic flux of Salmonella, and the transcriptome of the host during infection of wild type C57BL/6 and immune-deficient gp91-/-phox mice. Our analyses advance the understanding of how S. enterica and the host behaves during infection to a more sophisticated level than has previously been reported.

Indexed as

TranscriptomeAnimalsBacterial ProteinsFemaleGene DeletionGene Expression Regulation, BacterialGenes, BacterialImmunologic Deficiency SyndromesMaleMiceMice, Inbred C57BLProteomeReceptors, ImmunologicSalmonella Infections, AnimalSalmonella typhimuriumBacterial ProteinsPirb protein, mouseProteomeReceptors, Immunologic

Identifiers

PMID28796780
PMCPMC5552096
OpenAlexW2742440708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.