Evidence map›Paper›PMID 28795735›Full record

ArticleNanoscale2017

Detection of methylation on dsDNA using nanopores in a MoS

Jiwook Shim, Shouvik Banerjee, Hu Qiu, Kirby K H Smithe, David Estrada, Julian Bello, Eric Pop, Klaus Schulten, Rashid Bashir

Abstract read
In one paragraph

Article in Nanoscale, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Jiwook ShimDepartment of Biomedical Engineering, Rowan University, Glassboro, NJ 08028, USA. shimj@rowan.edu.
Shouvik Banerjee
Hu Qiu
Kirby K H Smithe
David Estrada
Julian Bello
Eric Pop
Klaus Schulten
Rashid Bashir
University of Illinois Urbana-Champaign · USRowan University · USStanford Medicine · USBoise State University · USNanjing University of Aeronautics and Astronautics · CN

Funding

VPS35 D620N inhibits autophagy through disrupted hyaluronic acid-CD44 signalingP20GM109095 · NIGMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA THOM · 2014 to 2023
$22.7M
WHOLE CELL SIMULATIONP41RR005969 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI STONE, JOHN H · 1990 to 2011
$19.8M
DNA Methylation Analysis Using Solid-State Nanopore Sensors - A Pathway to EarlyR21CA155863 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BASHIR, RASHID · 2011 to 2012
$355k
NCI NIH HHS R21 CA155863NCRR NIH HHS P41 RR005969NIGMS NIH HHS P20 GM109095
6 · The paper itself

Abstract

Methylation at the 5-carbon position of the cytosine nucleotide base in DNA has been shown to be a reliable diagnostic biomarker for carcinogenesis. Early detection of methylation and intervention could drastically increase the effectiveness of therapy and reduce the cancer mortality rate. Current methods for detecting methylation involve bisulfite genomic sequencing, which are cumbersome and demand a large sample size of bodily fluids to yield accurate results. Hence, more efficient and cost effective methods are desired. Based on our previous work, we present a novel nanopore-based assay using a nanopore in a MoS

Indexed as

DNA MethylationNanoporesDNADNA

Identifiers

PMID28795735
PMCPMC5890527
OpenAlexW2737040036

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.