Evidence map›Paper›PMID 28795266›Full record

ArticleVirus genes2017

Whole-genome sequence analysis of Zika virus, amplified from urine of traveler from the Philippines.

Se Hun Gu, Dong Hyun Song, Daesang Lee, Jeyoun Jang, Min Young Kim, Jaehun Jung, Koung In Woo, Mirang Kim, Woong Seog, Hong Sang Oh and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Virus genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Se Hun GuThe 5th R&D Institute, Agency for Defense Development, Yuseong, P.O. Box 35, Daejeon, 34186, Republic of Korea.
Dong Hyun SongThe 5th R&D Institute, Agency for Defense Development, Yuseong, P.O. Box 35, Daejeon, 34186, Republic of Korea.
Daesang LeeThe 5th R&D Institute, Agency for Defense Development, Yuseong, P.O. Box 35, Daejeon, 34186, Republic of Korea.
Jeyoun JangArmed Forces Medical Research Institute, 90 Jaunro, Yuseong, Daejeon, 305-878, Republic of Korea.
Min Young KimArmed Forces Medical Research Institute, 90 Jaunro, Yuseong, Daejeon, 305-878, Republic of Korea.
Jaehun JungArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Koung In WooArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Mirang KimArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Woong SeogArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Hong Sang OhArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Byung Seop ChoiArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Jong-Seong AhnArmed Forces Medical Command, 177 Saemaeul-ro, Bundang-gu, P.O. Box 100, Seongnam-Si, 463-040, Republic of Korea.
Quehn ParkArmed Forces Medical Research Institute, 90 Jaunro, Yuseong, Daejeon, 305-878, Republic of Korea.
Seong Tae JeongThe 5th R&D Institute, Agency for Defense Development, Yuseong, P.O. Box 35, Daejeon, 34186, Republic of Korea. seongtae@add.re.kr.
Armed Forces Capital Hospital · KRAgency for Defense Development · KR

Funding

Agency for Defense Development 611665-912388501Agency for Defense Development 611665-912543001
6 · The paper itself

Abstract

Zika virus (ZIKV) (genus Flavivirus, family Flaviviridae) is an emerging pathogen associated with microcephaly and Guillain-Barré syndrome. The rapid spread of ZIKV disease in over 60 countries and the large numbers of travel-associated cases have caused worldwide concern. Thus, intensified surveillance of cases among immigrants and tourists from ZIKV-endemic areas is important for disease control and prevention. In this study, using Next Generation Sequencing, we reported the first whole-genome sequence of ZIKV strain AFMC-U, amplified from the urine of a traveler returning to Korea from the Philippines. Phylogenetic analysis showed geographic-specific clustering. Our results underscore the importance of examining urine in the diagnosis of ZIKV infection.

Indexed as

HumansPhilippinesPhylogenyRepublic of KoreaTravelWhole Genome SequencingZika VirusZika Virus InfectionNext generation sequencing (NGS)PhilippinesSouth KoreaWhole-genome sequenceZika virus

Identifiers

PMID28795266
PMCPMC5698360
OpenAlexW2744401580

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.