Evidence map›Paper›PMID 28794177›Full record

ArticleJournal of clinical microbiology2017

Discovery and Validation of a Six-Marker Serum Protein Signature for the Diagnosis of Active Pulmonary Tuberculosis.

Mary A De Groote, David G Sterling, Thomas Hraha, Theresa M Russell, Louis S Green, Kirsten Wall, Stephan Kraemer, Rachel Ostroff, Nebojsa Janjic, Urs A Ochsner

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Recent Characterization of Key Proteins to Combat Tuberculosis.Advances in experimental medicine and biology · 2026
    Review
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  9. Review
  10. Article
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  12. Article
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  15. Review
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  19. Article
  20. Development and Validation of a Parsimonious Tuberculosis Gene Signature Using the digital NanoString nCounter Platform.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Mary A De GrooteSomaLogic, Inc., Boulder, Colorado, USA.
David G SterlingSomaLogic, Inc., Boulder, Colorado, USA.
Thomas HrahaSomaLogic, Inc., Boulder, Colorado, USA.
Theresa M RussellSomaLogic, Inc., Boulder, Colorado, USA.
Louis S GreenSomaLogic, Inc., Boulder, Colorado, USA.
Kirsten WallSomaLogic, Inc., Boulder, Colorado, USA.
Stephan KraemerSomaLogic, Inc., Boulder, Colorado, USA.
Rachel OstroffSomaLogic, Inc., Boulder, Colorado, USA.
Nebojsa JanjicSomaLogic, Inc., Boulder, Colorado, USA.
Urs A OchsnerSomaLogic, Inc., Boulder, Colorado, USA uochsner@somalogic.com.
SomaLogic (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

New non-sputum biomarker tests for active tuberculosis (TB) diagnostics are of the highest priority for global TB control. We performed in-depth proteomic analysis using the 4,000-plex SOMAscan assay on 1,470 serum samples from seven countries where TB is endemic. All samples were from patients with symptoms and signs suggestive of active pulmonary TB that were systematically confirmed or ruled out for TB by culture and clinical follow-up. HIV coinfection was present in 34% of samples, and 25% were sputum smear negative. Serum protein biomarkers were identified by stability selection using L1-regularized logistic regression and by Kolmogorov-Smirnov (KS) statistics. A naive Bayes classifier using six host response markers (HR6 model), including SYWC, kallistatin, complement C9, gelsolin, testican-2, and aldolase C, performed well in a training set (area under the sensitivity-specificity curve [AUC] of 0.94) and in a blinded verification set (AUC of 0.92) to distinguish TB and non-TB samples. Differential expression was also highly significant (

Indexed as

Antigens, BacterialBiomarkersBlood ProteinsComplement C9Fructose-Bisphosphate AldolaseGelsolinHumansMycobacterium tuberculosisProteoglycansProteomicsSensitivity and SpecificitySerpinsTuberculosis, PulmonaryAntigens, BacterialBiomarkersBlood ProteinsComplement C9Fructose-Bisphosphate AldolaseGelsolinkallistatinProteoglycansSerpinsSPOCK2 protein, humanaptamerbiomarkerproteomicstuberculosis

Identifiers

PMID28794177
PMCPMC5625392
OpenAlexW2742532089

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.