Evidence map›Paper›PMID 28794032›Full record

ArticleJournal of virology2017

Recombinant Origins of Pathogenic and Nonpathogenic Mouse Gammaretroviruses with Polytropic Host Range.

Devinka Bamunusinghe, Qingping Liu, Ronald Plishka, Michael A Dolan, Matthew Skorski, Andrew J Oler, Venkat R K Yedavalli, Alicia Buckler-White, Janet W Hartley, Christine A Kozak

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Human Endogenous Retroviruses in Diseases.Sub-cellular biochemistry · 2023
    Article
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Devinka BamunusingheLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Qingping LiuLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Ronald PlishkaLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Michael A DolanBioinformatics and Computational Biosciences Branch, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Matthew SkorskiLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Andrew J OlerBioinformatics and Computational Biosciences Branch, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Venkat R K YedavalliLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Alicia Buckler-WhiteLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Janet W HartleyLaboratory of Immunopathology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA.
Christine A KozakLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, USA ckozak@niaid.nih.gov.
National Institute of Allergy and Infectious Diseases · US

Funding

Genetic Aspects Of Viral Oncogenesis In Wild Mouse SpeciesZIAAI000300 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI KOZAK, CHRISTINE · 2009 to 2025
$19.0M
GENETIC CONTROL OF RESISTANCE TO FRIEND VIRUS IN WILD MOUSE POPULATIONSZ01AI000300 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI KOZAK, CHRISTINE · 1985 to 2008
$1.3M
Intramural NIH HHS Z01 AI000300
6 · The paper itself

Abstract

Ecotropic, xenotropic, and polytropic mouse leukemia viruses (E-, X-, and P-MLVs) exist in mice as infectious viruses and endogenous retroviruses (ERVs) inserted into mouse chromosomes. All three MLV subgroups are linked to leukemogenesis, which involves generation of recombinants with polytropic host range. Although P-MLVs are deemed to be the proximal agents of disease induction, few biologically characterized infectious P-MLVs have been sequenced for comparative analysis. We analyzed the complete genomes of 16 naturally occurring infectious P-MLVs, 12 of which were typed for pathogenic potential. We sought to identify ERV progenitors, recombinational hot spots, and segments that are always replaced, never replaced, or linked to pathogenesis or host range. Each P-MLV has an E-MLV backbone with P- or X-ERV replacements that together cover 100% of the recombinant genomes, with different substitution patterns for X- and P-ERVs. Two segments are always replaced, both coding for envelope (Env) protein segments: the N terminus of the surface subunit and the cytoplasmic tail R peptide. Viral

Indexed as

Amino Acid SequenceAnimalsBase SequenceEvolution, MolecularGenome, ViralHost SpecificityLeukemia, ExperimentalLeukemia Virus, MurineMiceMolecular Dynamics SimulationProtein ConformationReceptors, VirusRetroviridae InfectionsSequence HomologyTerminal Repeat SequencesTumor Virus InfectionsReceptors, VirusViral Proteinsorigins of infectious gammaretrovirusespathogenic mouse gammaretrovirusespolytropic mouse gammaretrovirusesrecombinant retrovirusesretroviral N-heptad repeat

Identifiers

PMID28794032
PMCPMC5640873
OpenAlexW2745065328

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.