Evidence map›Paper›PMID 28792980›Full record

ArticlePloS one2017

Evolutionary implications of heterochromatin and rDNA in chromosome number and genome size changes during dysploidy: A case study in Reichardia genus.

Sonja Siljak-Yakovlev, Bernard Godelle, Vlatka Zoldos, Joan Vallès, Teresa Garnatje, Oriane Hidalgo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  8. Molecular Cytogenetics ofBioMed research international · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 6 institutions in 4 countries.

Sonja Siljak-YakovlevEcologie Systématique Evolution, CNRS, AgroParisTech, Univ. Paris-Sud, Université Paris-Saclay, Orsay, France.ORCID http://orcid.org/0000-0002-6247-3351
Bernard GodelleInstitut des Sciences de l'Evolution (CNRS-UMR 5554), Université Montpellier II, Place Eugène Bataillon, Montpellier, France.
Vlatka ZoldosDepartment of Biology, Division of Molecular Biology, University of Zagreb, Faculty of Science, Zagreb, Croatia.
Joan VallèsLaboratori de Botànica (UB) - Unitat associada al CSIC, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Catalonia, Spain.
Teresa GarnatjeInstitut Botànic de Barcelona (IBB-CSIC-ICUB), Barcelona, Catalonia, Spain.
Oriane HidalgoComparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, Richmond, Surrey, United Kingdom.
Centre National de la Recherche Scientifique · FRInstitut Botànic de Barcelona · ESRoyal Botanic Gardens, Kew · GBUniversitat de Barcelona · ESUniversité Paris-Sud · FRUniversity of Zagreb · HR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study we showed that constitutive heterochromatin, GC-rich DNA and rDNA are implicated in chromosomal rearrangements during the basic chromosome number changing (dysploidy) in Reichardia genus. This small Mediterranean genus comprises 8-10 species and presents three basic chromosome numbers (x = 9, 8 and 7). To assess genome evolution and differentiation processes, studies were conducted in a dysploid series of six species: R. dichotoma, R. macrophylla and R. albanica (2n = 18), R. tingitana and R. gaditana (2n = 16), and R. picroides (2n = 14). The molecular phylogeny reconstruction comprised three additional species (R. crystallina and R. ligulata, 2n = 16 and R. intermedia, 2n = 14). Our results indicate that the way of dysploidy is descending. During this process, a positive correlation was observed between chromosome number and genome size, rDNA loci number and pollen size, although only the correlation between chromosome number and genome size is still recovered significant once considering the phylogenetic effect. Fluorescent in situ hybridisation also evidenced changes in number, position and organisation of two rDNA families (35S and 5S), including the reduction of loci number and, consequently, reduction in the number of secondary constrictions and nuclear organising regions from three to one per diploid genome. The potential mechanisms of chromosomal and genome evolution, strongly implicating heterochromatin, are proposed and discussed, with particular consideration for Reichardia genus.

Indexed as

AsteraceaeChromosome MappingDNA, PlantDNA, RibosomalEvolution, MolecularGenome, PlantGenome SizeHeterochromatinIn Situ Hybridization, FluorescencePhylogenyDNA, PlantDNA, RibosomalHeterochromatin

Identifiers

PMID28792980
PMCPMC5549912
OpenAlexW2742492943

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.