Evidence map›Paper›PMID 28792590›Full record

ArticleFEBS letters2017

Regulation of Rab5 isoforms by transcriptional and post-transcriptional mechanisms in yeast.

Oliver Schmidt, Yannick Weyer, Matthias J Fink, Martin Müller, Sabine Weys, Marietta Bindreither, David Teis

Open access · hybridAbstract readLetter
In one paragraph

Article in FEBS letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Oliver SchmidtDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.
Yannick WeyerDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.
Matthias J FinkDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.
Martin MüllerDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.
Sabine WeysDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.
Marietta BindreitherDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.
David TeisDivision of Cell Biology, Biocenter, Medical University of Innsbruck, Austria.ORCID 0000-0002-8181-0253
Innsbruck Medical University · AT

Funding

Austrian Science Fund FWF P 29583Austrian Science Fund FWF Y 444
6 · The paper itself

Abstract

Rab5 GTPases are master regulators of early endosome biogenesis and transport. The genome of Saccharomyces cerevisiae encodes three Rab5 proteins: Vps21, the major isoform, Ypt52 and Ypt53. Here, we show that Vps21 is the most abundant Rab5 protein and Ypt53 is the least abundant. In stressed cells, Ypt53 levels increase but never exceed that of Vps21. Its induction requires the transcription factors Crz1 and Gis1. In growing cells, the expression of Ypt53 is suppressed by post-transcriptional mechanisms mediated by the untranslated regions of the YPT53 mRNA. Based on genetic experiments, these sequences appear to stimulate deadenylation, Pat1-activated decapping and Xrn1-mediated mRNA degradation. Once this regulation is bypassed, Ypt53 protein levels surpass Vps21, and Ypt53 is sufficient to maintain endosomal function and cell growth.

Indexed as

Blotting, WesternDNA-Binding ProteinsEndosomesHistone DemethylasesMicroscopy, Fluorescencerab5 GTP-Binding Proteinsrab GTP-Binding ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsCRZ1 protein, S cerevisiaeDNA-Binding ProteinsGIS1 protein, S cerevisiaeHistone Demethylasesrab5 GTP-Binding Proteinsrab GTP-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription FactorsVPS21 protein, S cerevisiaeYPT53 protein, S cerevisiaemRNA decayRab5 GTPasesstressVps21Ypt53

Identifiers

PMID28792590
PMCPMC5637908
OpenAlexW2744848661

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.