ArticleApplications in plant sciences2017
AveDissR: An R function for assessing genetic distinctness and genetic redundancy.
Article in Applications in plant sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed.
- A fourth subgenome of the Camelina genus reveals gene dominance is influenced by chromosomal proximity.Nature communications · 2026Article
- Individual Genomic Distinctness of Rice Germplasm as Measured with an Average Pairwise Dissimilarity of Genome-Wide SNPs and Structural Variants.Plants (Basel, Switzerland) · 2025Article
- Assessing Genetic Distinctness and Redundancy of Plant Germplasm Conserved Ex Situ Based on Published Genomic SNP Data.Plants (Basel, Switzerland) · 2023Article
- Patterns of Genetic Variation in a Soybean Germplasm Collection as Characterized with Genotyping-by-Sequencing.Plants (Basel, Switzerland) · 2021Article
- Assessing Diversity in theG3 (Bethesda, Md.) · 2020Article
- Advancing crested wheatgrass [Agropyron cristatum (L.) Gaertn.] breeding through genotyping-by-sequencing and genomic selection.PloS one · 2020Article
- High-Throughput Genotype, Morphology, and Quality Traits Evaluation for the Assessment of Genetic Diversity of Wheat Landraces from Sicily.Plants (Basel, Switzerland) · 2019Article
- Genotyping-by-Sequencing Enhances Genetic Diversity Analysis of Crested Wheatgrass [International journal of molecular sciences · 2018Article
- AveDissR: An R function for assessing genetic distinctness and genetic redundancy.Applications in plant sciences · 2017Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premise of the studyAssessing genetic distinctness or redundancy is an important part of plant germplasm characterization. We previously introduced a new marker-based approach using the average dissimilarity of an accession to assess genetic distinctness or redundancy. However, this approach has not been widely applied, largely due to the lack of software to integrate separate analyses involving dissimilarity calculation, analysis of molecular variance, and principal coordinates analysis. METHODS AND
resultsAn R function, AveDissR, was developed to integrate three separate analyses into one package for assessing genetic distinctness or redundancy. It can analyze large data sets of dominant or codominant markers such as amplified fragment length polymorphisms (AFLPs), simple sequence repeats (SSRs), or single-nucleotide polymorphisms (SNPs), generate a useful set of output files for germplasm assessment, and run in an R environment on any computer platform.
conclusionsAveDissR can make the assessment of genetic distinctness or redundancy in plant germplasm more feasible and useful.
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