Evidence map›Paper›PMID 28790460›Full record

ArticleEmerging microbes & infections2017

Role of domestic ducks in the emergence of a new genotype of highly pathogenic H5N1 avian influenza A viruses in Bangladesh.

Subrata Barman, Atanaska Marinova-Petkova, M Kamrul Hasan, Sharmin Akhtar, Rabeh El-Shesheny, Jasmine Cm Turner, John Franks, David Walker, Jon Seiler, Kimberly Friedman and 10 more

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 51 citations in OpenAlex.

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  16. Pathology of an outbreak of highly pathogenic avian influenza A(H5N1) virus of clade 2.3.2.1a in turkeys in Bangladesh.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 3 countries.

Subrata BarmanDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Atanaska Marinova-PetkovaDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
M Kamrul HasanDepartment of Zoology, Jahangirnagar University, Dhaka 1342, Bangladesh.
Sharmin AkhtarDepartment of Zoology, Jahangirnagar University, Dhaka 1342, Bangladesh.
Rabeh El-SheshenyDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Jasmine Cm TurnerDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
John FranksDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
David WalkerDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Jon SeilerDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Kimberly FriedmanDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Lisa KercherDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Trushar JeevanDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Daniel DarnellDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Ghazi KayaliDepartment of Epidemiology, Human Genetics and Environmental Sciences, University of Texas Health Sciences Center, Houston, TX 77459, USA.ORCID http://orcid.org/0000-0002-5387-1622
Lisa Jones-EngelNational Primate Research Center, University of Washington, Seattle, WA 98195, USA.ORCID http://orcid.org/0000-0001-6912-494X
Pamela McKenzieDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Scott KraussDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Richard J WebbyDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Robert G WebsterDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Mohammed M FeerozDepartment of Zoology, Jahangirnagar University, Dhaka 1342, Bangladesh.
St. Jude Children's Research Hospital · USJahangirnagar University · BDNational Research Centre · EGUniversity of Washington · US

Funding

NIAID NIH HHS HHSN272201400006C
6 · The paper itself

Abstract

Highly pathogenic avian influenza H5N1 viruses were first isolated in Bangladesh in February 2007. Subsequently, clades 2.2.2, 2.3.4.2 and 2.3.2.1a were identified in Bangladesh, and our previous surveillance data revealed that by the end of 2014, the circulating viruses exclusively comprised clade 2.3.2.1a. We recently determined the status of circulating avian influenza viruses in Bangladesh by conducting surveillance of live poultry markets and waterfowl in wetland areas from February 2015 through February 2016. Until April 2015, clade 2.3.2.1a persisted without any change in genotype. However, in June 2015, we identified a new genotype of H5N1 viruses, clade 2.3.2.1a, which quickly became predominant. These newly emerged H5N1 viruses contained the hemagglutinin, neuraminidase and matrix genes of circulating 2.3.2.1a Bangladeshi H5N1 viruses and five other genes of low pathogenic Eurasian-lineage avian influenza A viruses. Some of these internal genes were closely related to those of low pathogenic viruses isolated from ducks in free-range farms and wild birds in a wetland region of northeastern Bangladesh, where commercially raised domestic ducks have frequent contact with migratory birds. These findings indicate that migratory birds of the Central Asian flyway and domestic ducks in the free-range farms in Tanguar haor-like wetlands played an important role in the emergence of this novel genotype of highly pathogenic H5N1 viruses.

Indexed as

Animal MigrationAnimalsAnimals, WildAnseriformesBangladeshDucksEpidemiological MonitoringGenotypeHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsNeuraminidasePoultry DiseasesReassortant VirusesViral Matrix ProteinsWetlandsHemagglutinin Glycoproteins, Influenza VirusNeuraminidaseViral Matrix Proteins

Identifiers

PMID28790460
PMCPMC5583668
OpenAlexW2744773745

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.