Evidence map›Paper›PMID 28790371›Full record

ArticleScientific reports2017

Unraveling heme detoxification in the malaria parasite by in situ correlative X-ray fluorescence microscopy and soft X-ray tomography.

Sergey Kapishnikov, Daniel Grolimund, Gerd Schneider, Eva Pereiro, James G McNally, Jens Als-Nielsen, Leslie Leiserowitz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 84 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. 3D surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semisupervised deep learning.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Reactive Oxygen Species as the Brainbox in Malaria Treatment.Antioxidants (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Review
  15. Article
  16. Mode of action of quinoline antimalarial drugs in red blood cells infected byProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
  18. Review
  19. Imaging cell morphology and physiology using X-rays.Biochemical Society transactions · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 6 countries.

Sergey KapishnikovSoft Matter and Functional Materials, Helmholtz-Zentrum Berlin, Albert-Einstein-Str. 15, 12489, Berlin, Germany. sergey.kapishnikov@nbi.ku.dk.
Daniel GrolimundPaul Scherrer Institute, 5232, Villigen, PSI, Switzerland.
Gerd SchneiderSoft Matter and Functional Materials, Helmholtz-Zentrum Berlin, Albert-Einstein-Str. 15, 12489, Berlin, Germany.
Eva PereiroALBA Synchrotron Light Source, MISTRAL Beamline-Experiments Division, 08290, Cerdanyola del Valles, Barcelona, Spain.
James G McNallySoft Matter and Functional Materials, Helmholtz-Zentrum Berlin, Albert-Einstein-Str. 15, 12489, Berlin, Germany. james.mcnally@helmholtz-berlin.de.
Jens Als-NielsenNiels Bohr Institute, University of Copenhagen, Universitetsparken 5, 2100, Copenhagen, Denmark. jens.als.nielsen@gmail.com.
Leslie LeiserowitzDepartment of Materials and Interfaces, Weizmann Institute of Science, Rehovot, 76100, Israel.
Helmholtz-Zentrum Berlin für Materialien und Energie · DEALBA Synchrotron (Spain) · ESPaul Scherrer Institute · CHUniversity of Copenhagen · DKWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A key drug target for malaria has been the detoxification pathway of the iron-containing molecule heme, which is the toxic byproduct of hemoglobin digestion. The cornerstone of heme detoxification is its sequestration into hemozoin crystals, but how this occurs remains uncertain. We report new results of in vivo rate of heme crystallization in the malaria parasite, based on a new technique to measure element-specific concentrations at defined locations in cell ultrastructure. Specifically, a high resolution correlative combination of cryo soft X-ray tomography has been developed to obtain 3D parasite ultrastructure with cryo X-ray fluorescence microscopy to measure heme concentrations. Our results are consistent with a model for crystallization via the heme detoxification protein. Our measurements also demonstrate the presence of considerable amounts of non-crystalline heme in the digestive vacuole, which we show is most likely contained in hemoglobin. These results suggest a tight coupling between hemoglobin digestion and heme crystallization, highlighting a new link in the crystallization pathway for drug development.

Indexed as

Models, ChemicalCells, CulturedCrystallizationErythrocytesHemeHemeproteinsHemoglobinsHumansIronKineticsMicroscopyPlasmodium falciparumSpectrometry, X-Ray EmissionVacuolesX-Ray MicrotomographyHemeHemeproteinsHemoglobinshemozoinIron

Identifiers

PMID28790371
PMCPMC5548722
OpenAlexW2741069489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.