Evidence map›Paper›PMID 28790370›Full record

ArticleScientific reports2017

Duplication events downstream of IRX1 cause North Carolina macular dystrophy at the MCDR3 locus.

Valentina Cipriani, Raquel S Silva, Gavin Arno, Nikolas Pontikos, Ambreen Kalhoro, Sandra Valeina, Inna Inashkina, Mareta Audere, Katrina Rutka, Bernard Puech and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Genetics and diagnostics of inherited retinal diseases in the era of whole genome sequencing.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2025
    Article
  2. North Carolina Macular Dystrophy.Advances in experimental medicine and biology · 2025
    Review
  3. Systematic review:Frontiers in medicine · 2025
    Review
  4. Review
  5. Article
  6. A novelMolecular vision · 2024
    Article
  7. Article
  8. The landscape of submicroscopic structural variants at theProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. A novel tandem duplication of PRDM13 in a Chinese family with North Carolina macular dystrophy.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2022
    Article
  10. Article
  11. A novel duplication involvingMolecular vision · 2021
    Article
  12. Ocular genetics in the genomics age.American journal of medical genetics. Part C, Seminars in medical genetics · 2020
    Review
  13. Article
  14. A uniqueMolecular vision · 2020
    Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 5 countries.

Valentina CiprianiUCL Institute of Ophthalmology, London, UK. v.cipriani@ucl.ac.uk.
Raquel S SilvaUCL Institute of Ophthalmology, London, UK.
Gavin ArnoUCL Institute of Ophthalmology, London, UK.
Nikolas PontikosUCL Institute of Ophthalmology, London, UK.
Ambreen KalhoroUCL Institute of Ophthalmology, London, UK.
Sandra ValeinaChildren's Clinical University Hospital, Riga, Latvia.
Inna InashkinaLatvian Biomedical Research and Study Centre, Riga, Latvia.
Mareta AudereLatvian Biomedical Research and Study Centre, Riga, Latvia.
Katrina RutkaLatvian Biomedical Research and Study Centre, Riga, Latvia.
Bernard PuechExploration de la Vision et Neuro-Ophtalmologie, Centre Hospitalier Universitaire, Lille, France.
Michel MichaelidesUCL Institute of Ophthalmology, London, UK.
Veronica van HeyningenUCL Institute of Ophthalmology, London, UK.ORCID 0000-0003-0359-0141
Baiba LaceLatvian Biomedical Research and Study Centre, Riga, Latvia.
Andrew R WebsterUCL Institute of Ophthalmology, London, UK. andrew.webster@ucl.ac.uk.
Anthony T MooreUCL Institute of Ophthalmology, London, UK. tony.moore@ucsf.edu.
Latvian Biomedical Research and Study Centre · LVMoorfields Eye Hospital · GBUniversity College London · GBCentre Hospitalier Universitaire de Lille · FRChildren's Clinical University Hospital · LVMoorfields Eye Hospital NHS Foundation Trust · GBUK Dementia Research Institute · GBUniversity of California, San Francisco · US

Funding

British Heart Foundation
6 · The paper itself

Abstract

Autosomal dominant North Carolina macular dystrophy (NCMD) is believed to represent a failure of macular development. The disorder has been linked to two loci, MCDR1 (chromosome 6q16) and MCDR3 (chromosome 5p15-p13). Recently, non-coding variants upstream of PRDM13 (MCDR1) and a duplication including IRX1 (MCDR3) have been identified. However, the underlying disease-causing mechanism remains uncertain. Through a combination of sequencing studies on eighteen NCMD families, we report two novel overlapping duplications at the MCDR3 locus, in a gene desert downstream of IRX1 and upstream of ADAMTS16. One duplication of 43 kb was identified in nine families (with evidence for a shared ancestral haplotype), and another one of 45 kb was found in a single family. Three families carry the previously reported V2 variant (MCDR1), while five remain unsolved. The MCDR3 locus is thus refined to a shared region of 39 kb that contains DNAse hypersensitive sites active at a restricted time window during retinal development. Publicly available data confirmed expression of IRX1 and ADAMTS16 in human fetal retina, with IRX1 preferentially expressed in fetal macula. These findings represent a major advance in our understanding of the molecular genetics of NCMD and provide insights into the genetic pathways involved in human macular development.

Indexed as

Genetic LociADAMTS ProteinsAdultBase SequenceChromosome DuplicationChromosomes, Human, Pair 5Chromosomes, Human, Pair 6Corneal Dystrophies, HereditaryEye ProteinsFamilyFemaleFetusGene ExpressionHaplotypesHomeodomain ProteinsHumansADAMTS16 protein, humanADAMTS ProteinsEye ProteinsHomeodomain ProteinsIRX1 protein, humanTranscription Factors

Identifiers

PMID28790370
PMCPMC5548758
OpenAlexW2950653364

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.