ArticleScientific reports2017
Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.
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62 citing papers in PubMed.
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- New generic classification for Korean Peucedanum L. (Apiaceae) species based on deep phylogenomic study.BMC plant biology · 2026Article
- Turnip Mosaic Virus Infection in a Perennial Arabidopsis Reduces Aphid Fecundity in the Natural Environment.Molecular ecology · 2025Article
- Comparative Analysis of Chloroplast Genomes of 19International journal of molecular sciences · 2025Article
- Cold suppresses virus accumulation and alters the host transcriptomic response in the turnip mosaic virus-Arabidopsis halleri system.Plant & cell physiology · 2025Article
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- Comparative analysis of the complete chloroplast genome of Pueraria provides insights for species identification, phylogenetic relationships, and taxonomy.BMC plant biology · 2024Article
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- Complete chloroplast genome sequence of Artemisia littoricola (Asteraceae) from Dokdo Island Korea: genome structure, phylogenetic analysis, and biogeography study.Functional & integrative genomics · 2024Article
- Genetic characterization and phylogenetic analysis of the Nigella sativa (black seed) plastome.Scientific reports · 2024Article
- Seasonal switching of integrated leaf senescence controls in an evergreen perennial Arabidopsis.Nature communications · 2024Article
- Comparative chloroplast genomics and phylogenetic analysis of Oreomecon nudicaulis (Papaveraceae).BMC genomic data · 2024Article
- Chloroplast genomes of Caragana tibetica and Caragana turkestanica: structures and comparative analysis.BMC plant biology · 2024Article
- Three complete chloroplast genomes from two north American Rhus species and phylogenomics of Anacardiaceae.BMC genomic data · 2024Article
- The complete plastome sequences of invasive weed Parthenium hysterophorus: genome organization, evolutionary significance, structural features, and comparative analysis.Scientific reports · 2024Article
- Chloroplast genomes in sevenFrontiers in genetics · 2024Article
- Comparative chloroplast genome analysis of five widespread species (Frontiers in genetics · 2024Article
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7 authors.
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Abstract
We investigated the complete chloroplast (cp) genomes of non-model Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea using Illumina paired-end sequencing to understand their genetic organization and structure. Detailed bioinformatics analysis revealed genome sizes of both subspecies ranging between 154.4~154.5 kbp, with a large single-copy region (84,197~84,158 bp), a small single-copy region (17,738~17,813 bp) and pair of inverted repeats (IRa/IRb; 26,264~26,259 bp). Both cp genomes encode 130 genes, including 85 protein-coding genes, eight ribosomal RNA genes and 37 transfer RNA genes. Whole cp genome comparison of A. halleri ssp. gemmifera and A. lyrata ssp. petraea, along with ten other Arabidopsis species, showed an overall high degree of sequence similarity, with divergence among some intergenic spacers. The location and distribution of repeat sequences were determined, and sequence divergences of shared genes were calculated among related species. Comparative phylogenetic analysis of the entire genomic data set and 70 shared genes between both cp genomes confirmed the previous phylogeny and generated phylogenetic trees with the same topologies. The sister species of A. halleri ssp. gemmifera is A. umezawana, whereas the closest relative of A. lyrata spp. petraea is A. arenicola.
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