ArticleBMC genomics2017
Comparative transcriptome analysis reveals key cadmium transport-related genes in roots of two pak choi (Brassica rapa L. ssp. chinensis) cultivars.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Cadmium Stress Signaling Pathways in Plants: Molecular Responses and Mechanisms.Current issues in molecular biology · 2024Review
- An integration of genome-wide survey, homologous comparison and gene expression analysis provides a basic framework for the ZRT, IRT-like protein (ZIP) in foxtail millet.Frontiers in plant science · 2024Article
- Knowledge Mapping of the Phytoremediation of Cadmium-Contaminated Soil: A Bibliometric Analysis from 1994 to 2021.International journal of environmental research and public health · 2022Review
- Transcriptomic analyses of sweet potato in response to Cd exposure and protective effects of K on Cd-induced physiological alterations.Environmental science and pollution research international · 2022Article
- Unraveling Cadmium Toxicity inInternational journal of molecular sciences · 2022Article
- Cadmium Phytotoxicity, Tolerance, and Advanced Remediation Approaches in Agricultural Soils; A Comprehensive Review.Frontiers in plant science · 2022Review
- Article
- Comparative transcriptome analysis provides insights into steviol glycoside synthesis in stevia (Stevia rebaudiana Bertoni) leaves under nitrogen deficiency.Plant cell reports · 2021Article
- Genome-wide identification and function analysis of HMAD gene family in cotton (Gossypium spp.).BMC plant biology · 2021Article
- Transcriptomic Characterization of Nitrate-Enhanced Stevioside Glycoside Synthesis in Stevia (International journal of molecular sciences · 2021Article
- Review
- Combined transcriptomic, proteomic and biochemical approaches to identify the cadmium hyper-tolerance mechanism of turnip seedling leaves.Environmental science and pollution research international · 2021Article
- Potential of cotton for remediation of Cd-contaminated soils.Environmental monitoring and assessment · 2021Article
- Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation inFrontiers in genetics · 2021Article
- Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation.BMC plant biology · 2019Article
- Variations in cadmium accumulation and distribution among different oilseed rape cultivars in Chengdu Plain in China.Environmental science and pollution research international · 2019Article
- Comparative transcriptome analysis reveals gene network regulating cadmium uptake and translocation in peanut roots under iron deficiency.BMC plant biology · 2019Article
- Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars.BMC genomics · 2018Article
- Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs.BMC genomics · 2018Article
- Article
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6 authors.
Funding
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Abstract
backgroundCadmium translocation from roots to shoots is a complex biological process that is controlled by gene regulatory networks. Pak choi exhibits wide cultivar variations in Cd accumulation. However, the molecular mechanism involved in cadmium translocation and accumulation is still unclear. To isolate differentially expressed genes (DEGs) involved in transporter-mediated regulatory mechanisms of Cd translocation in two contrasting pak choi cultivars, Baiyewuyueman (B, high Cd accumulator) and Kuishan'aijiaoheiye (K, low Cd accumulator), eight cDNA libraries from the roots of two cultivars were constructed and sequenced by RNA-sequencing.
resultsA total of 244,190 unigenes were obtained. Of them, 6827 DEGs, including BCd
conclusionsHigh Cd cultivar (Baiyewuyueman) showed higher expression levels in plasma membrane-localized transport genes (i.e., ZIP2, ZIP3, IRT1, HMA2 and HMA4) and tonoplast-localized transport genes (i.e., CAX4, HMA3, MRP7, MTP3 and COPT5) than low Cd cultivar (Kuishan'aijiaoheiye). These genes, therefore, might be involved in root-to-shoot Cd translocation in pak choi.
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