Evidence map›Paper›PMID 28789611›Full record

ArticleBMC genomics2017

Role of the GRAS transcription factor ATA/RAM1 in the transcriptional reprogramming of arbuscular mycorrhiza in Petunia hybrida.

Mélanie K Rich, Pierre-Emmanuel Courty, Christophe Roux, Didier Reinhardt

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome-Wide Identification of DlGRAS Family and Functional Analysis ofInternational journal of molecular sciences · 2025
    Article
  4. Genome-wide identification of theFrontiers in plant science · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. The receptor-like kinase ARK controls symbiotic balance across land plants.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Molecular Regulation of Arbuscular Mycorrhizal Symbiosis.International journal of molecular sciences · 2022
    Review
  13. Integrative Analysis of theFrontiers in plant science · 2022
    Article
  14. Review
  15. Overexpression ofFrontiers in plant science · 2022
    Article
  16. Article
  17. Article
  18. TheFrontiers in plant science · 2021
    Article
  19. Constitutive Overexpression ofPlant physiology · 2020
    Article
  20. Mechanisms and Impact of Symbiotic Phosphate Acquisition.Cold Spring Harbor perspectives in biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Mélanie K RichDepartment of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland.
Pierre-Emmanuel CourtyDepartment of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland.
Christophe RouxLaboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 Chemin de Borde Rouge-Auzeville, 31326, Castanet-Tolosan, France.
Didier ReinhardtDepartment of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland. didier.reinhardt@unifr.ch.ORCID 0000-0003-3495-6783
Centre National de la Recherche Scientifique · FRUniversity of Fribourg · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDevelopment of arbuscular mycorrhiza (AM) requires a fundamental reprogramming of root cells for symbiosis. This involves the induction of hundreds of genes in the host. A recently identified GRAS-type transcription factor in Petunia hybrida, ATA/RAM1, is required for the induction of host genes during AM, and for morphogenesis of the fungal endosymbiont. To better understand the role of RAM1 in symbiosis, we set out to identify all genes that depend on activation by RAM1 in mycorrhizal roots.

resultsWe have carried out a transcript profiling experiment by RNAseq of mycorrhizal plants vs. non-mycorrhizal controls in wild type and ram1 mutants. The results show that the expression of early genes required for AM, such as the strigolactone biosynthetic genes and the common symbiosis signalling genes, is independent of RAM1. In contrast, genes that are involved at later stages of symbiosis, for example for nutrient exchange in cortex cells, require RAM1 for induction. RAM1 itself is highly induced in mycorrhizal roots together with many other transcription factors, in particular GRAS proteins.

conclusionSince RAM1 has previously been shown to be directly activated by the common symbiosis signalling pathway through CYCLOPS, we conclude that it acts as an early transcriptional switch that induces many AM-related genes, among them genes that are essential for the development of arbuscules, such as STR, STR2, RAM2, and PT4, besides hundreds of additional RAM1-dependent genes the role of which in symbiosis remains to be explored. Taken together, these results indicate that the defect in the morphogenesis of the fungal arbuscules in ram1 mutants may be an indirect consequence of functional defects in the host, which interfere with nutrient exchange and possibly other functions on which the fungus depends.

Indexed as

Transcription, GeneticGene OntologyMutationMycorrhizaePetuniaPlant ProteinsRNA, MessengerTranscription FactorsPlant ProteinsRNA, MessengerTranscription FactorsArbuscular mycorrhizaGRAS transcription factorPetunia hybridaRAM1Symbiosis

Identifiers

PMID28789611
PMCPMC5549340
OpenAlexW2743222782

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.