Evidence map›Paper›PMID 28787546›Full record

ArticleMolecular microbiology2017

Carbonyl reduction by YmfI in Bacillus subtilis prevents accumulation of an inhibitory EF-P modification state.

Katherine R Hummels, Anne Witzky, Andrei Rajkovic, Rodney Tollerson, Lisa A Jones, Michael Ibba, Daniel B Kearns

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Translation factors that keep the ribosome Pro-active.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Elongation factor P modulatesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Translation elongation factor P (EF-P).FEMS microbiology reviews · 2020
    Review
  12. Complex Structure ofJournal of bacteriology · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Katherine R HummelsDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Anne WitzkyDepartment of Molecular Genetics and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Andrei RajkovicDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Rodney TollersonDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Lisa A JonesProteomics Facility, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109.
Michael IbbaDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Daniel B KearnsDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.ORCID http://orcid.org/0000-0002-3460-8378
The Ohio State University · USIndiana University Bloomington · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Mechanisms of translational controlR01GM065183 · NIGMS · OHIO STATE UNIVERSITY · PI DUNHAM, CHRISTINE M, FREDRICK, KURT L · 2003 to 2020
$4.9M
The mechanism of bistable motility gene expression in Bacillus subtilis.R01GM093030 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KEARNS, DANIEL B · 2010 to 2018
$2.6M
Cellular, molecular, and biochemical sciences training grantT32GM086252 · NIGMS · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH, MUSIER-FORSYTH, KARIN M · 2011 to 2020
$2.0M
A Systems Biology Approach for Targeted Drug Discovery for LeishmaniasisR21AI127582 · NIAID · OHIO STATE UNIVERSITY · PI IBBA, MICHAEL, SATOSKAR, ABHAY R · 2017 to 2018
$401k
NCI NIH HHS P30 CA015704NIAID NIH HHS R21 AI127582NIGMS NIH HHS R01 GM065183NIGMS NIH HHS R01 GM093030NIGMS NIH HHS T32 GM086252
6 · The paper itself

Abstract

Translation elongation factor P (EF-P) in Bacillus subtilis is required for a form of surface migration called swarming motility. Furthermore, B. subtilis EF-P is post-translationally modified with a 5-aminopentanol group but the pathway necessary for the synthesis and ligation of the modification is unknown. Here we determine that the protein YmfI catalyzes the reduction of EF-P-5 aminopentanone to EF-P-5 aminopentanol. In the absence of YmfI, accumulation of 5-aminopentanonated EF-P is inhibitory to swarming motility. Suppressor mutations that enhanced swarming in the absence of YmfI were found at two positions on EF-P, including one that changed the conserved modification site (Lys 32) and abolished post-translational modification. Thus, while modification of EF-P is thought to be essential for EF-P activity, here we show that in some cases it can be dispensable. YmfI is the first protein identified in the pathway leading to EF-P modification in B. subtilis, and B. subtilis encodes the first EF-P ortholog that retains function in the absence of modification.

Indexed as

Alcohol OxidoreductasesBacillus subtilisCarboxylic AcidsCell MovementPeptide Elongation FactorsProtein Processing, Post-TranslationalAlcohol OxidoreductasesaminopentolCarboxylic Acidsfactor EF-PPeptide Elongation Factors

Identifiers

PMID28787546
PMCPMC5630506
OpenAlexW2743193455

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.