Evidence map›Paper›PMID 28786365›Full record

ArticleBMC medical genomics2017

PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension.

Feng Chen, Chenghong Wang, Wenrui Dai, Xiaoqian Jiang, Noman Mohammed, Md Momin Al Aziz, Md Nazmus Sadat, Cenk Sahinalp, Kristin Lauter, Shuang Wang

Abstract read
In one paragraph

Article in BMC medical genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework.Proceedings. IEEE International Conference on Cloud Computing · 2021
    Article
  8. A secure system for genomics clinical decision support.Journal of biomedical informatics · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Feng ChenDepartment of Biomedical Informatics, University of California San Diego, La Jolla, 92093, CA, USA. f4chen@ucsd.edu.
Chenghong WangDepartment of Computer Science, Syracuse University, Syracuse, 13244, NY, USA.
Wenrui DaiDepartment of Biomedical Informatics, University of California San Diego, La Jolla, 92093, CA, USA.
Xiaoqian JiangDepartment of Biomedical Informatics, University of California San Diego, La Jolla, 92093, CA, USA.
Noman MohammedDepartment of Computer Science, University of Manitoba, Winnipeg, R3T 2N2, MB, Canada.
Md Momin Al AzizDepartment of Computer Science, University of Manitoba, Winnipeg, R3T 2N2, MB, Canada.
Md Nazmus SadatDepartment of Computer Science, University of Manitoba, Winnipeg, R3T 2N2, MB, Canada.
Cenk SahinalpDepartment of Computer Science and Informatics, Indiana University, Bloomington, 47408, IN, USA.
Kristin LauterCryptography Group, Microsoft Research, San Diego,, 92122, CA, USA.
Shuang WangDepartment of Biomedical Informatics, University of California San Diego, La Jolla, 92093, CA, USA.

Funding

Decentralized differentially-private methods for dynamic data release and analysisR01GM118609 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIANG, XIAOQIAN, OHNO-MACHADO, LUCILA · 2017 to 2020
$2.3M
Encryption methods and software for privacy-preserving analysis of biomedical dataU01EB023685 · NIBIB · TRUSTEES OF INDIANA UNIVERSITY · PI TANG, HAIXU, WANG, XIAOFENG · 2016 to 2018
$1.4M
Secure and PrivAte Collaborative EnvironmentS (SPACES) for biomedical analyticsR01GM118574 · NIGMS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI VAIDYA, JAIDEEP · 2017 to 2019
$1.1M
Protecting the pRivacy Of Genomes in REsearch StudieS (PROGRESS)R00HG008175 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, SHUANG · 2016 to 2018
$527k
Protect Privacy of Healthcare Data in the CloudR21LM012060 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIANG, XIAOQIAN · 2014 to 2015
$376k
NHGRI NIH HHS R00 HG008175NIBIB NIH HHS U01 EB023685NIGMS NIH HHS R01 GM118574NIGMS NIH HHS R01 GM118609NLM NIH HHS R21 LM012060
6 · The paper itself

Abstract

backgroundAdvances in DNA sequencing technologies have prompted a wide range of genomic applications to improve healthcare and facilitate biomedical research. However, privacy and security concerns have emerged as a challenge for utilizing cloud computing to handle sensitive genomic data.

methodsWe present one of the first implementations of Software Guard Extension (SGX) based securely outsourced genetic testing framework, which leverages multiple cryptographic protocols and minimal perfect hash scheme to enable efficient and secure data storage and computation outsourcing.

resultsWe compared the performance of the proposed PRESAGE framework with the state-of-the-art homomorphic encryption scheme, as well as the plaintext implementation. The experimental results demonstrated significant performance over the homomorphic encryption methods and a small computational overhead in comparison to plaintext implementation.

conclusionsThe proposed PRESAGE provides an alternative solution for secure and efficient genomic data outsourcing in an untrusted cloud by using a hybrid framework that combines secure hardware and multiple crypto protocols.

Indexed as

Computer SecurityGenetic TestingSequence Analysis, DNASoftwareCloud ComputingOutsourced ServicesData outsourcingHomomorphic encryptionPrivacy preservingSGX

Identifiers

PMID28786365
PMCPMC5547453

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.