Evidence map›Paper›PMID 28786136›Full record

ArticleStatistics in medicine2017

Estimation of smooth ROC curves for biomarkers with limits of detection.

Leonidas E Bantis, Qingxiang Yan, John V Tsimikas, Ziding Feng

Abstract read
In one paragraph

Article in Statistics in medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Leonidas E BantisDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, 77030, TX, U.S.A.ORCID http://orcid.org/0000-0002-2364-2562
Qingxiang YanDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, 77030, TX, U.S.A.ORCID http://orcid.org/0000-0003-3842-3933
John V TsimikasDepartment of Mathematics, Division of Statistics and Data Analysis, University of the Aegean, Samos, 83200, Greece.
Ziding FengDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, 77030, TX, U.S.A.

Funding

The Early Detection Research Network: Data Management and Coordinating CenterU24CA086368 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI RUTH D ETZIONI, Ziding Feng · 2010 to 2026
$75.7M
Consortium for the Study of Chronic Pancreatitis, Diabetes and Pancreatic Cancer: Coordinating and Data Management Center (CSCPDPC-CDMC)U01DK108328 · NIDDK · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Liang Li, Suyu Liu · 2015 to 2026
$32.8M
Incorporating Biomarkers to Improve Lung Cancer Risk PredictionU01CA194733 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI FENG, ZIDING, HANASH, SAMIR M · 2016 to 2018
$2.0M
NCI NIH HHS U01 CA194733NCI NIH HHS U24 CA086368NIDDK NIH HHS U01 DK108328
6 · The paper itself

Abstract

Protein biomarkers found in plasma are commonly used for cancer screening and early detection. Measurements obtained by such markers are often based on different assays that may not support detection of accurate measurements due to a limit of detection. The ROC curve is the most popular statistical tool for the evaluation of a continuous biomarker. However, in situations where limits of detection exist, the empirical ROC curve fails to provide a valid estimate for the whole spectrum of the false positive rate (FPR). Hence, crucial information regarding the performance of the marker in high sensitivity and/or high specificity values is not revealed. In this paper, we address this problem and propose methods for constructing ROC curve estimates for all possible FPR values. We explore flexible parametric methods, transformations to normality, and robust kernel-based and spline-based approaches. We evaluate our methods though simulations and illustrate them in colorectal and pancreatic cancer data.

Indexed as

ROC CurveArea Under CurveBiomarkersBiometryColonic NeoplasmsComputer SimulationHumansLimit of DetectionModels, StatisticalPancreatic NeoplasmsBiomarkersbiomarkerBox-Coxcancercensoringclassificationearly detectiongeneralized gammakernelslimit of detectionROCspline

Identifiers

PMID28786136
PMCPMC5679135

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.