Evidence map›Paper›PMID 28785065›Full record

ArticleScientific reports2017

Twisting of DNA Origami from Intercalators.

Reza M Zadegan, Elias G Lindau, William P Klein, Christopher Green, Elton Graugnard, Bernard Yurke, Wan Kuang, William L Hughes

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Salting-Out of DNA Origami Nanostructures by Ammonium Sulfate.International journal of molecular sciences · 2022
    Article
  5. Article
  6. Article
  7. DNA origami patterning of synthetic T cell receptors reveals spatial control of the sensitivity and kinetics of signal activation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Reza M ZadeganMicron School of Materials Science & Engineering, Boise State University, Boise, Idaho, 83725, United States.ORCID 0000-0001-9662-7331
Elias G LindauMicron School of Materials Science & Engineering, Boise State University, Boise, Idaho, 83725, United States.
William P KleinMicron School of Materials Science & Engineering, Boise State University, Boise, Idaho, 83725, United States.
Christopher GreenMicron School of Materials Science & Engineering, Boise State University, Boise, Idaho, 83725, United States.
Elton GraugnardMicron School of Materials Science & Engineering, Boise State University, Boise, Idaho, 83725, United States.
Bernard YurkeDepartment of Electrical & Computer Engineering, Boise State University, Boise, Idaho, 83725, United States.
Wan KuangDepartment of Electrical & Computer Engineering, Boise State University, Boise, Idaho, 83725, United States.
William L HughesMicron School of Materials Science & Engineering, Boise State University, Boise, Idaho, 83725, United States. willhughes@boisestate.edu.
Micron (United States) · USBoise State University · US

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Kenneth A Cornell · 2012 to 2026
$59.8M
Low Cost Diagnosis of Disease using Synthetic DNA ReactionsK25GM093233 · NIGMS · BOISE STATE UNIVERSITY · PI HUGHES, WILLIAM L. · 2011 to 2015
$686k
NIGMS NIH HHS K25 GM093233NIGMS NIH HHS P20 GM103408
6 · The paper itself

Abstract

DNA nanostructures represent the confluence of materials science, computer science, biology, and engineering. As functional assemblies, they are capable of performing mechanical and chemical work. In this study, we demonstrate global twisting of DNA nanorails made from two DNA origami six-helix bundles. Twisting was controlled using ethidium bromide or SYBR Green I as model intercalators. Our findings demonstrate that DNA nanorails: (i) twist when subjected to intercalators and the amount of twisting is concentration dependent, and (ii) twisting saturates at elevated concentrations. This study provides insight into how complex DNA structures undergo conformational changes when exposed to intercalators and may be of relevance when exploring how intercalating drugs interact with condensed biological structures such as chromatin and chromosomes, as well as chromatin analogous gene expression devices.

Indexed as

BenzothiazolesDiaminesDNAEthidiumIntercalating AgentsModels, MolecularNanostructuresNucleic Acid ConformationOrganic ChemicalsQuinolinesBenzothiazolesDiaminesDNAEthidiumIntercalating AgentsOrganic ChemicalsQuinolinesSYBR Green I

Identifiers

PMID28785065
PMCPMC5547094
OpenAlexW2741884056

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.